1 5' 3' | 2 5' 3' | 3 5' 3' |
...taaaatcatatggagtatgaaccaactgtacatatatctgtagtttgatttagagatgcctaaaatttacttgtgtgaaattattattcccttttttcagAAGATTGGAGGCATGTTCCAAGAAGTCATTGCAATGTTTGTTCCAGTACTGAACCAATCTAGCTCGGCTCCATTTCAAGCCATCATAGGCACCACCTCAG
species | Oryza sativa |
transcript | LOC_Os01g54190.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAGGTGAAGAAGGACCCGGGCAAGACTTACAGGCAAGCTACCTCTCCATG AAGATTGGAGGCATGTTCCAAGAAGTCATTGCAATGTTTGTTCCAGTACTGEST: gi|58600387|gb|CK010915.1|CK010915
genomic: TAGGTGAAGAAGGACCCGGGCAAGACTTACAGGCAAGCTACCTCTCCATGgtatgatctc ... cttttttcagAAGATTGGAGGCATGTTCCAAGAAGTCATTGCAATGTTTGTTCCAGTACTG
EST: TAGGTGAAGAAGGACCCGGGCAAGACTTACAGGCAAGCTACCTCTCCATG AAGATTGGAGGCATGTTCCAAGAAGTCATTGC--TGTT----CCAGTACTGEST: gi|33686216|gb|CF314455.1|CF314455
genomic: TAGGTGAAGAAGGACCCGGGCAAGACTTACAGGCAAGCTACCTCTCCATGgtatgatctc ... cttttttcagAAGATTGGAGGCATGTTCCAAGAAGTCATTGCAATGTTTGTTCCAGTACTG
EST: TAGGTGAAGAAGGACCCGGGCAAGACTTACAGGCAAGCTACCTCTCCATG AAGATTGGAGGCATGTTCCAAGAAGTCATTGCAATGTTTGTTCCAGTACTG
genomic: TAGGTGAAGAAGGACCCGGGCAAGACTTACAGGCAAGCTACCTCTCCATGgtatgatctc ... cttttttcagAAGATTGGAGGCATGTTCCAAGAAGTCATTGCAATGTTTGTTCCAGTACTG
tgatttagagatgcctaaaatttacttgtgtgaaattattattcccttttttcagAAGATTGGAGGCATGTTCCAAGAAGTCATTGCAATGTTTGTTCCAGTACTGAACCAATCTAGCTCGGCTCCATTTCAAGCCATCATAGGCACCACCTCAG
gcctaaa putative branch site (score: 19)
ttattattcccttttt putative PPT
taaaatttacttgtgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaatcatatggagtatgaaccaactgtacatatatctgtagtttgatttagagatgcctaaaatttacttgtgtgaaattattattcccttttttcagAAGATTGGAGGCATGTTCCAAGAAGTCATTGCAATGTTTGTTCCAGTACTGAACCAATCTAGCTCGGCTCCATTTCAAGCCATCATAGGCACCACCTCAG
- - - - - - - - - gaaccaa
- - - - - - - - - - - - -ctgtaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - gatgcct