1 5' 3' | 2 5' 3' | 3 5' 3' |
gtcaattccttcccacaagctcctttgtcccagatctataatatctgggctattccctaagttatctggtttattcaagatttttctaattggggattttttatagGTTAATACAGAAGTTAGGTGAAGAAGGACCCGGGCAAGACTTACAGGCAAGCTACCTCTCCATG
species | Oryza sativa |
transcript | LOC_Os01g54190.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCAGTTGCTCTGGCGCGACGATGGCCAGGGGCCGCGCTGCCCTCCTCAG GTTAATACAGAAGTTAGGTGAAGAAGGACCCGGGCAAGACTTACAGGCAAGEST: gi|33686216|gb|CF314455.1|CF314455
genomic: GGCAGTTGCTCCGGCGCGACGATGGCCAGGGGCCGCGCTGCCCTCCTCAGgtcaattcct ... ttttttatagGTTAATACAGAAGTTAGGTGAAGAAGGACCCGGGCAAGACTTACAGGCAAG
EST: GGCAGTTGCTCCGGCGCGACGATGGCCAGGGGCCGCGCTGCCCTCCTCAG GTTAATACAGAAGTTAGGTGAAGAAGGACCCGGGCAAGACTTACAGGCAAG
genomic: GGCAGTTGCTCCGGCGCGACGATGGCCAGGGGCCGCGCTGCCCTCCTCAGgtcaattcct ... ttttttatagGTTAATACAGAAGTTAGGTGAAGAAGGACCCGGGCAAGACTTACAGGCAAG
attccctaagttatctggtttattcaagatttttctaattggggattttttatagGTTAATACAGAAGTTAGGTGAAGAAGGACCCGGGCAAGACTTACAGGCAAGCTACCTCTCCATG
ttctaat putative branch site (score: 4)
ttttttat putative PPT
tttattcaagattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaattccttcccacaagctcctttgtcccagatctataatatctgggctattccctaagttatctggtttattcaagatttttctaattggggattttttatagGTTAATACAGAAGTTAGGTGAAGAAGGACCCGGGCAAGACTTACAGGCAAGCTACCTCTCCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT