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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAATAAACATGGAATGGGGTAACTTTAAGTCCTCACATCTTCCACTTACTGAATTTGATCAAGAGTTGGATGCAGAAAGTTTGAACCCTGGCAAACAGgtattacccttatgttgttgctcccttttgtgggtaatgactcatgataaggatattgccctaccag

Basic information

species Oryza sativa
transcript LOC_Os01g52450.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g52450.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G171373_T01 (Zea mays), 5'ss of exon 6
GTAATAAACATGGAATGGGGTAACTTTAAGTCCTCACATCTTCCACTTACTGAATTTGATCAAGAGTTGGATGCAGAAAGTTTGAACCCTGGCAAACAGgtattaccctt---------------atgttgttgctcccttttgtgggtaatgactcatgataaggatattgccctaccag
|| ||||||||||||||||| ||||||| |||| | || |||||||| ||||||||||||  ||  |||||||||||||||||||||||||   |||||||||| |||||               ||| | ||   |||||| ||   || ||||||     |    |||| ||   ||||
GTGATAAACATGGAATGGGGGAACTTTAGGTCCACCCACCTTCCACTGACTGAATTTGATGTAGCCTTGGATGCAGAAAGTTTGAACCCTGATGAACAGgtattgcccttcatatgctacagattatgatcttttaccctttggtttttattgactct--gcagcattatttccaacccag

upper sequence: LOC_Os01g52450.1 (Oryza sativa), 5'ss of exon 6
lower sequence: AT4G29130.1 (Arabidopsis thaliana), 5'ss of exon 5
-GTAATAAACATGGAATGGGGTAACTTTAAGTCCTCACATCTTCCACTTACTGAATTTGATCAAGAGTTGGATGCAGAAAGTTTGAACCCTGGCAAACAGgta--------ttacccttatgttgttgctcccttttgtgggta---atgactcatgataaggatattgccctaccag----------------
 || ||||||||||||||||| ||||| | ||| |||||||||||| | || || ||||||||   | |||||   || ||| |||| || ||| ||||||||        | | ||     |||||| | |    ||    ||   | ||    |    || ||      |||   |                
GGTTATAAACATGGAATGGGGAAACTTCAGGTCATCACATCTTCCATTAACCGAGTTTGATCACACGCTGGATTTCGAGAGTCTGAATCCAGGCGAACAGgtacgagtttttaaaccccggtttgttgttacaaaatgccaatacctacgaggtgtctcgagaatgagtttctatgtggaatttcattttgcag