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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTTACGAGTTCAATTAGGAGGCAAAGAACGTCGAATTATCAAGCAAGACTCAGAAGGGATATCCATTCCACAACATTTAATGTCCAGCAGTTCACATgtaaatcatgtctcactttctgcaatttgttcgttccaatcatttttatgattctatactaagtctggcacatttggtgtgattttgctctag

Basic information

species Oryza sativa
transcript LOC_Os01g52450.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g52450.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G171373_T01 (Zea mays), 5'ss of exon 2
TGTTTTACGAGTTCAATTAGGAGGCAAAGAACGTCGAATTATCAAGCAAGACTCAGAAGGGATATCCATTCCACAACATTTAATGTCCAGCAGTTCACATgtaaa---tcatgtctcactttctgcaatttgttcgttccaatcatttt---tatga----------------ttctatactaagtctggcacatttggtgtgattttgctctag
|||||||||| |||| || || ||||| ||||  |||||  |||||||||| ||  ||  | |||||||||| |||||||||||||||||  | ||| ||||||    ||| ||| ||| |       |   ||| || || | |||||   |||||                |  || ||||||| ||  |  ||   ||| ||| |  | |||
TGTTTTACGAATTCAGTTTGGGGGCAAGGAACAACGAATAGTCAAGCAAGAATCTAAAACGGTATCCATTCCTCAACATTTAATGTCCAGGGGATCAAATgtaaggagtcacgtc-cacgtctcatgttacattcatttcagttattttatttatgaggaactcatttttttgtcatacactaagtttgcaatgttctctgtaattctattttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33677814|gb|CF306053.1|CF306053
EST:     ACTCAGAAGGGATATCCATTCCACAACATTTAATGTCCAGCAGTTCACAT                         GAGTTGTTTGATTTTGTTGCTGTGGCTTTAGCAAAATTTGTTGCCTCTGAA
genomic: ACTCAGAAGGGATATCCATTCCACAACATTTAATGTCCAGCAGTTCACATgtaaatcatg ... tttgctctagGAGTTGTTTGATTTTGTTGCTGTGGCTTTAGCAAAATTTGTTGCCTCTGAA