1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagagcattttctcagataaatatacacttggcacttttaataagtatataaaactaaacctggccgtgctttttctagAAACTGGCTCAAAACTGCAAGGAACCTGTGCTCATCTGATGAATCCAAGAAATTTCGGCTGGGTAGCCTGGAGAACGAGATTGCTGCATTGGAGAAAGAA
species | Oryza sativa |
transcript | LOC_Os01g51920.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AACCTTGACATGCCTGGCCCGAAATCTGTACTCATTTGGGACCGACTGAA AAACTGGCTCAAAACTGCAAGGAACCTGTGCTCATCTGATGAATCCAAGAAEST: gi|23380849|gb|BU667294.1|BU667294
genomic: AACCTTGACATGCCTGGCCCGAAATCTGTACTCATTTGGGACCGACTGAAgtaagagcat ... ctttttctagAAACTGGCTCAAAACTGCAAGGAACCTGTGCTCATCTGATGAATCCAAGAA
EST: AACCTTGACATGCCTGGCCCGAAATCTGTACTCATTTGGGACCGACTGAA AAACTGGCTCAAAACTGCAAGGAACCTGTGCTCATCTGATGAATCCAAGAAEST: gi|58672419|gb|CK061105.1|CK061105
genomic: AACCTTGACATGCCTGGCCCGAAATCTGTACTCATTTGGGACCGACTGAAgtaagagcat ... ctttttctagAAACTGGCTCAAAACTGCAAGGAACCTGTGCTCATCTGATGAATCCAAGAA
EST: AACCTTGACATGCCTGGCCCGAAATCTGTACTCATTTGGGACCGACTGAA AAACTGGCTCAAAACTGCAAGGAACCTGTGCTCATCTGATGAATCCAAGAAEST: gi|33381326|gb|CF196669.1|CF196669
genomic: AACCTTGACATGCCTGGCCCGAAATCTGTACTCATTTGGGACCGACTGAAgtaagagcat ... ctttttctagAAACTGGCTCAAAACTGCAAGGAACCTGTGCTCATCTGATGAATCCAAGAA
EST: AACCTTGACATGCCTGGCCCGAAATCTGTACTCATTTGGGACCGACTGAA AAACTGGCTCAAAACTGCAAGGAACCTGTGCTCATCTGATGAATCCAAGAAEST: gi|33675298|gb|CF303537.1|CF303537
genomic: AACCTTGACATGCCTGGCCCGAAATCTGTACTCATTTGGGACCGACTGAAgtaagagcat ... ctttttctagAAACTGGCTCAAAACTGCAAGGAACCTGTGCTCATCTGATGAATCCAAGAA
EST: AACCTTGACATGCCTGGCCCGAAATCTGTACTCATTTGGGACCGACTGAA AAACTGGCTCAAAACTGCAAGGAACCTGTGCTCATCTGATGAATCCAAGAAEST: gi|58588260|gb|CF986568.1|CF986568
genomic: AACCTTGACATGCCTGGCCCGAAATCTGTACTCATTTGGGACCGACTGAAgtaagagcat ... ctttttctagAAACTGGCTCAAAACTGCAAGGAACCTGTGCTCATCTGATGAATCCAAGAA
EST: CGAAATCTGTACTCATTTGGGACCGACTGAA AAACTGGCTCAAAACTGCAAGGAACCTGTGCTCATCTGATGAATCCAAGAAEST: gi|33676500|gb|CF304739.1|CF304739
genomic: CGAAATCTGTACTCATTTGGGACCGACTGAAgtaagagcat ... ctttttctagAAACTGGCTCAAAACTGCAAGGAACCTGTGCTCATCTGATGAATCCAAGAA
EST: AACCTTGACATGCCTGGCCCGAAATCTGTACTCATTTGGGACCGACTGAA AAACTGGCTCAAAACTGCAAGGAACCTGTGCTCATCTGATGAATCCAAAAAEST: gi|58590362|gb|CF988670.1|CF988670
genomic: AACCTTGACATGCCTGGCCCGAAATCTGTACTCATTTGGGACCGACTGAAgtaagagcat ... ctttttctagAAACTGGCTCAAAACTGCAAGGAACCTGTGCTCATCTGATGAATCCAAGAA
EST: AACCTTGACATGCCTGGCCCGAAATCTGTACTCATTTGGGACCGACTGAA AAACTGGCTCAAAACTGCAAGGAACCTGTGCTCATCTGATGAATCCAAGAAEST: gi|33679472|gb|CF307711.1|CF307711
genomic: AACCTTGACATGCCTGGCCCGAAATCTGTACTCATTTGGGACCGACTGAAgtaagagcat ... ctttttctagAAACTGGCTCAAAACTGCAAGGAACCTGTGCTCATCTGATGAATCCAAGAA
EST: AACCTTGACATGCCTGGCCCGAAATCTGTACTCATTTGGGACCGACTGAA AAACTGGCTCAAAACTGCAAGGAACCTGTGCTCATCTGATGAATCCAAGAAEST: gi|40488156|gb|BX898760.1|BX898760
genomic: AACCTTGACATGCCTGGCCCGAAATCTGTACTCATTTGGGACCGACTGAAgtaagagcat ... ctttttctagAAACTGGCTCAAAACTGCAAGGAACCTGTGCTCATCTGATGAATCCAAGAA
EST: GGGACCGACTGAA AAACTGGCTCAAAACTGCAAGGAACCTGTGCTCATCTGATGAATCCAAGAA
genomic: GGGACCGACTGAAgtaagagcat ... ctttttctagAAACTGGCTCAAAACTGCAAGGAACCTGTGCTCATCTGATGAATCCAAGAA
acacttggcacttttaataagtatataaaactaaacctggccgtgctttttctagAAACTGGCTCAAAACTGCAAGGAACCTGTGCTCATCTGATGAATCCAAGAAATTTCGGCTGGGTAGCCTGGAGAACGAGATTGCTGCATTGGAGAAAGAA
aactaaa putative branch site (score: 65)
tgctttttct putative PPT
acttttaataagtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagcattttctcagataaatatacacttggcacttttaataagtatataaaactaaacctggccgtgctttttctagAAACTGGCTCAAAACTGCAAGGAACCTGTGCTCATCTGATGAATCCAAGAAATTTCGGCTGGGTAGCCTGGAGAACGAGATTGCTGCATTGGAGAAAGAA
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