1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGAGGTGCGCACCTTCGAGTGCATGTCTCGCCATGGCCAAGGCCCCCGCCTCCTCGGCCGGTTCACCAACGGCCGCGTCGAGGAGTTCATCCACGCAAGGgtaggtgcacatgaatatgatatgattccgcgctgctgtagccaaactgtctagccttcctcgcgccacggattgtgttttctcctcccgttttttccct...
species | Oryza sativa |
transcript | LOC_Os01g51920.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCTCGGCCGGTTCACCAACGGCCGCGTCGAGGAGTTCATCCACGCAAGG ACACTATCTGCAGCAGACCTTCGTGATCCTGAAATTTCAGCTCTGGTGGCGEST: gi|23380849|gb|BU667294.1|BU667294
genomic: TCCTCGGCCGGTTCACCAACGGCCGCGTCGAGGAGTTCATCCACGCAAGGgtaggtgcac ... tttctttcagACACTATCTGCAGCAGACCTTCGTGATCCTGAAATTTCAGCTCTGGTGGCG
EST: TCCTCGGCCGGTTCACCAACGGCCGCGTCGAGGAGTTCATCCACGCAAGG ACACTATCTGCAGCAGACCTTCGTGATCCTGAAATTTCAGCTCTGGTGGCGEST: gi|58672419|gb|CK061105.1|CK061105
genomic: TCCTCGGCCGGTTCACCAACGGCCGCGTCGAGGAGTTCATCCACGCAAGGgtaggtgcac ... tttctttcagACACTATCTGCAGCAGACCTTCGTGATCCTGAAATTTCAGCTCTGGTGGCG
EST: CCAACGGCCGCGTCGAGGAGTTCATCCACGCAAGG ACACTATCTGCAGCAGACCTTCGTGATCCTGAAATTTCAGCTCTGGTGGCGEST: gi|33381326|gb|CF196669.1|CF196669
genomic: CCAACGGCCGCGTCGAGGAGTTCATCCACGCAAGGgtaggtgcac ... tttctttcagACACTATCTGCAGCAGACCTTCGTGATCCTGAAATTTCAGCTCTGGTGGCG
EST: TTCATCCACGCAAGG ACACTATCTGCAGCAGACCTTCGTGATCCTGAAATTTCAGCTCTGGTGGCGEST: gi|33675298|gb|CF303537.1|CF303537
genomic: TTCATCCACGCAAGGgtaggtgcac ... tttctttcagACACTATCTGCAGCAGACCTTCGTGATCCTGAAATTTCAGCTCTGGTGGCG
EST: TCCTCGGCCGGTTCACCAACGGCCGCGTCGAGGAGTTCATCCACGCAAGG ACACTATCTGCAGCAGACCTTCGTGATCCTGAAATTTCAGCTCTGGTGGCGEST: gi|33676500|gb|CF304739.1|CF304739
genomic: TCCTCGGCCGGTTCACCAACGGCCGCGTCGAGGAGTTCATCCACGCAAGGgtaggtgcac ... tttctttcagACACTATCTGCAGCAGACCTTCGTGATCCTGAAATTTCAGCTCTGGTGGCG
EST: TCCTCGGCCGGTTCACCAACGGCCGCGTCGAGGAGTTCATCCACGCAAGG ACACTATCTGCAGCAGACCTTCGTGATCCTGAAATTTCAGCTCTGGTGGCGEST: gi|58590362|gb|CF988670.1|CF988670
genomic: TCCTCGGCCGGTTCACCAACGGCCGCGTCGAGGAGTTCATCCACGCAAGGgtaggtgcac ... tttctttcagACACTATCTGCAGCAGACCTTCGTGATCCTGAAATTTCAGCTCTGGTGGCG
EST: TCCTCGGCCGGTTCACCAACGGCCGCGTCGAGGAGTTCATCCACGCAAGG ACACTATCTGCAGCAGACCTTCGTGCAGCGGGAACTTTCAGCTCTGGTGGC
genomic: TCCTCGGCCGGTTCACCAACGGCCGCGTCGAGGAGTTCATCCACGCAAGGgtaggtgcac ... tttctttcagACACTATCTGCAGCAGACCTTCGTG-ATCCTGAAATTTCAGCTCTGGTGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGGTGCGCACCTTCGAGTGCATGTCTCGCCATGGCCAAGGCCCCCGCCTCCTCGGCCGGTTCACCAACGGCCGCGTCGAGGAGTTCATCCACGCAAGGgtaggtgcacatgaatatgatatgattccgcgctgctgtagccaaactgtctagccttcctcgcgccacggattgtgttttctcctcccgttttttccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcccg