1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gaaactggaatgcttttatggatactaatcaaattataactggagctgttaagctgtgttcgaacaaaatcatggctaactttctttgatatctttgtagGGTCATTGGAGATTCCCCTTTGGTATGGAGTTGCAAGGCTATGTCTACATCTTAACTCACCCAGGCACTCCTGCAATCTTCTATGATCATATATTTTCGC
species | Oryza sativa |
transcript | LOC_Os01g51754.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CACATTTATAGAAAATCATGACACTGGTTCTACTCAG GGTCATTGGAGATTCCCCTTTGGTATGGAGTTGCAAGGCTATGTCTACATCEST: gi|29678997|gb|CB675272.1|CB675272
genomic: CACATTTATAGAAAATCATGACACTGGTTCTACTCAGgtacattaca ... atctttgtagGGTCATTGGAGATTCCCCTTTGGTATGGAGTTGCAAGGCTATGTCTACATC
EST: CTTCGCGTGCTGTCACATTTATAGAAAATCATGACACTGGTTCTACTCAG GGTCATTGGAGATTCCCCTTTGGTATGGAGTTGCAAGGCTATGTCTACATCEST: gi|29677516|gb|CB673791.1|CB673791
genomic: CTTCGCGTGCTGTCACATTTATAGAAAATCATGACACTGGTTCTACTCAGgtacattaca ... atctttgtagGGTCATTGGAGATTCCCCTTTGGTATGGAGTTGCAAGGCTATGTCTACATC
EST: ATTTATAGAAAATCATGACACTGGTTCTACTCAG GGTCATTGGAGATTCCCCTTTGGTATGGAGTTGCAAGGCTATGTCTACATC
genomic: ATTTATAGAAAATCATGACACTGGTTCTACTCAGgtacattaca ... atctttgtagGGTCATTGGAGATTCCCCTTTGGTATGGAGTTGCAAGGCTATGTCTACATC
ctgttaagctgtgttcgaacaaaatcatggctaactttctttgatatctttgtagGGTCATTGGAGATTCCCCTTTGGTATGGAGTTGCAAGGCTATGTCTACATCTTAACTCACCCAGGCACTCCTGCAATCTTCTATGATCATATATTTTCGC
tatcttt CT-rich tract
aacaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaactggaatgcttttatggatactaatcaaattataactggagctgttaagctgtgttcgaacaaaatcatggctaactttctttgatatctttgtagGGTCATTGGAGATTCCCCTTTGGTATGGAGTTGCAAGGCTATGTCTACATCTTAACTCACCCAGGCACTCCTGCAATCTTCTATGATCATATATTTTCGC
- - - ggaatgc
- - - - - - - - - - - - - aatcaaa
- - - - - - - - - - - - - - - - - - - -ctggagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catggct