1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TAATCAAGATGCCCACAGGCAGAGAATAGTTGATTGGATAAATGCTACAAATGGAACTGCTGGTGCATTTGATGTTACCACGAAAGGAATACTTCACTCTgtgagactccattttcttaccaagttttataatagtgcttatgggtgatttagtatttttgaaactctagaatttatatgcctttccatggtttgagctt...
species | Oryza sativa |
transcript | LOC_Os01g51754.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATGGAACTGCTGGTGCATTTGATGTTACCACGAAAGGAATACTTCACTCT GCACTGGAAAGAEST: gi|88670102|gb|CI724218.1|CI724218
genomic: ATGGAACTGCTGGTGCATTTGATGTTACCACGAAAGGAATACTTCACTCTgtgagactcc ... tggtatacagGCACTGGAAAGA
EST: ATGGAACTGCTGGTGCATTTGATGTTACCACGAAAGGAATACTTCACTCT GCACTGGAAAGEST: gi|29678996|gb|CB675271.1|CB675271
genomic: ATGGAACTGCTGGTGCATTTGATGTTACCACGAAAGGAATACTTCACTCTgtgagactcc ... tggtatacagGCACTGGAAAG
EST: ATGGAACTGCTGGTGCATTTGATGTTACCACGAAAGGAATACTTCACTCT GCACTGGAAAGATCTGAGTACTGGCGTCTGTCTGATGAAAAAGGAAAACCCEST: gi|88671942|gb|CI726050.1|CI726050
genomic: ATGGAACTGCTGGTGCATTTGATGTTACCACGAAAGGAATACTTCACTCTgtgagactcc ... tggtatacagGCACTGGAAAGATCTGAGTACTGGCGTCTGTCTGATGAAAAAGGAAAACCC
EST: ATGGAACTGCTGGTGCATTTGATGTTACCACGAAAGGAATACTTCACTCT GCACTGGAAAGATEST: gi|88672210|gb|CI726326.1|CI726326
genomic: ATGGAACTGCTGGTGCATTTGATGTTACCACGAAAGGAATACTTCACTCTgtgagactcc ... tggtatacagGCACTGGAAAGAT
EST: ATGGAACTGCTGGTGCATTTGATGTTACCACGAAAGGAATACTTCACTCT GCACTGGAAAGATCTGAGTACTGGCGTEST: gi|88672026|gb|CI726142.1|CI726142
genomic: ATGGAACTGCTGGTGCATTTGATGTTACCACGAAAGGAATACTTCACTCTgtgagactcc ... tggtatacagGCACTGGAAAGATCTGAGTACTGGCGT
EST: ATGGAACTGCTGGTGCATTTGATGTTACCACGAAAGGAATACTTCACTCT GCACTGGAAAGATCTGAGTACTGGCGTEST: gi|88673425|gb|CI727538.1|CI727538
genomic: ATGGAACTGCTGGTGCATTTGATGTTACCACGAAAGGAATACTTCACTCTgtgagactcc ... tggtatacagGCACTGGAAAGATCTGAGTACTGGCGT
EST: ATGGAACTGCTGGTGCATTTGATGTTACCACGAAAGGAATACTTCACTCT GCACTGGAAAGATCEST: gi|89172131|gb|CI721190.1|CI721190
genomic: ATGGAACTGCTGGTGCATTTGATGTTACCACGAAAGGAATACTTCACTCTgtgagactcc ... tggtatacagGCACTGGAAAGATC
EST: ATGGAACTGCTGGTGCATTTGATGTTACCACGAAAGGAATACTTCACTCT GCACTGGAAAGATCTGEST: gi|88667110|gb|CI719246.1|CI719246
genomic: ATGGAACTGCTGGTGCATTTGATGTTACCACGAAAGGAATACTTCACTCTgtgagactcc ... tggtatacagGCACTGGAAAGATCTG
EST: ATGGAACTGCTGGTGCATTTGATGTTACCACGAAAGGAATACTTCACTCT GCACTGGAAAGATCTGAGTACTGGCGTCTGTCTGATGAAAAAGGAEST: gi|88669291|gb|CI719429.1|CI719429
genomic: ATGGAACTGCTGGTGCATTTGATGTTACCACGAAAGGAATACTTCACTCTgtgagactcc ... tggtatacagGCACTGGAAAGATCTGAGTACTGGCGTCTGTCTGATGAAAAAGGA
EST: ATGGAACTGCTGGTGCATTTGATGTTACCACGAAAGGAATACTTCACTCT GCACTGGAAAGATCTGAGTACTGGCGTCTGTCTGATGEST: gi|88904363|gb|CI711671.1|CI711671
genomic: ATGGAACTGCTGGTGCATTTGATGTTACCACGAAAGGAATACTTCACTCTgtgagactcc ... tggtatacagGCACTGGAAAGATCTGAGTACTGGCGTCTGTCTGATG
EST: ATGGAACTGCTGGTGCATTTGATGTTACCACGAAAGGAATACTTCACTCT GCACTGGAAAGATCT
genomic: ATGGAACTGCTGGTGCATTTGATGTTACCACGAAAGGAATACTTCACTCTgtgagactcc ... tggtatacagGCACTGGAAAGATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAATCAAGATGCCCACAGGCAGAGAATAGTTGATTGGATAAATGCTACAAATGGAACTGCTGGTGCATTTGATGTTACCACGAAAGGAATACTTCACTCTgtgagactccattttcttaccaagttttataatagtgcttatgggtgatttagtatttttgaaactctagaatttatatgcctttccatggtttgagctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA