1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTGAAGAGGACAAACTTTCAACCAAAATATGGAGGAATAAAGGATGTTTTTCGAGGTGTTTATTCAGAAGGTGGAGTGCGAGCTCTCTATCGTGGAGTAGgtatgtatatccgactcatatatgtctaaatggctattcaatcaccataaaactctctcttgaactgaaaacgtcggatgtatatattcctgcttcacttttgacgagtatcagttttttcagtaccttcattactgtagtagttttgctgctgaggactcttatctatttgtgttcag
species | Oryza sativa |
transcript | LOC_Os01g51250.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCGAGGTGTTTATTCAGAAGGTGGAGTGCGAGCTCTCTATCGTGGAGTAG GTCCAACGCTCATGGGAATACTTCCTTATGCTGGTCTTAAATTCTACATATEST: gi|157651548|gb|EX451182.1|EX451182
genomic: TCGAGGTGTTTATTCAGAAGGTGGAGTGCGAGCTCTCTATCGTGGAGTAGgtatgtatat ... ttgtgttcagGTCCAACGCTCATGGGAATACTTCCTTATGCTGGTCTTAAATTCTACATAT
EST: TCGAGGTGTTTATTCAGAAGGTGGAGTGCGAGCTCTCTATCGTGGAGTAG GTCCAACGCTCATGGGAATACTTCCTTATGCTGGTCEST: gi|29674838|gb|CB671113.1|CB671113
genomic: TCGAGGTGTTTATTCAGAAGGTGGAGTGCGAGCTCTCTATCGTGGAGTAGgtatgtatat ... ttgtgttcagGTCCAACGCTCATGGGAATACTTCCTTATGCTGGTC
EST: TCGAGGTGTTTATTCAGAAGGTGGAGTGCGAGCTCTCTATCGTGGAGTAG GTCCAACGCTCATGGGAATACTTCCTTATGCTGGTCTTAAATTCTACATATEST: gi|29674839|gb|CB671114.1|CB671114
genomic: TCGAGGTGTTTATTCAGAAGGTGGAGTGCGAGCTCTCTATCGTGGAGTAGgtatgtatat ... ttgtgttcagGTCCAACGCTCATGGGAATACTTCCTTATGCTGGTCTTAAATTCTACATAT
EST: TCGAGGTGTTTATTCAGAAGGTGGAGTGCGAGCTCTCTATCGTGGAGTAG GTCCAACGCTCATGGGAATACTTCCTTATGCTGGTCTTAAATTCTACATATEST: gi|58695490|gb|CK084177.1|CK084177
genomic: TCGAGGTGTTTATTCAGAAGGTGGAGTGCGAGCTCTCTATCGTGGAGTAGgtatgtatat ... ttgtgttcagGTCCAACGCTCATGGGAATACTTCCTTATGCTGGTCTTAAATTCTACATAT
EST: CTATCGTGGAGTA- GTCCAACGCTCAT-GGAATACTTCCTTATGCTGGTCTTAAATTCTACATATEST: gi|157651895|gb|EX451529.1|EX451529
genomic: CTATCGTGGAGTAGgtatgtatat ... ttgtgttcagGTCCAACGCTCATGGGAATACTTCCTTATGCTGGTCTTAAATTCTACATAT
EST: CGAGGTGTTTATTCAGAATGGTGGAGTGCGAGCTCTCTATCGTGGAGTAG GTCCAACGCTCATGGGAATACTTCCTTAEST: gi|29666576|gb|CB662851.1|CB662851
genomic: CGAGGTGTTTATTCAGAA-GGTGGAGTGCGAGCTCTCTATCGTGGAGTAGgtatgtatat ... ttgtgttcagGTCCAACGCTCATGGGAATACTTCCTTA
EST: TCGAGGTGTTTATTCAGAAGGTGGAGTGCGAGCTCTCTATCGTGGAGTAG GTCCAACGCTCATGGGAATACTTCCTTATGCTGGTCTTAAATTCTACATATEST: gi|33683570|gb|CF311809.1|CF311809
genomic: TCGAGGTGTTTATTCAGAAGGTGGAGTGCGAGCTCTCTATCGTGGAGTAGgtatgtatat ... ttgtgttcagGTCCAACGCTCATGGGAATACTTCCTTATGCTGGTCTTAAATTCTACATAT
EST: TCGAGGTGTTTATTCAGAAGGTGGAGTGCGAGCTCTCTATCGTGGAGTAG GTCCAACGCTCATGGGAATACTTCCTTATGCTGGTCTTAAATTCTACATAT
genomic: TCGAGGTGTTTATTCAGAAGGTGGAGTGCGAGCTCTCTATCGTGGAGTAGgtatgtatat ... ttgtgttcagGTCCAACGCTCATGGGAATACTTCCTTATGCTGGTCTTAAATTCTACATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGAAGAGGACAAACTTTCAACCAAAATATGGAGGAATAAAGGATGTTTTTCGAGGTGTTTATTCAGAAGGTGGAGTGCGAGCTCTCTATCGTGGAGTAGgtatgtatatccgactcatatatgtctaaatggctattcaatcaccataaaactctctcttgaactgaaaacgtcggatgtatatattcctgcttcacttttgacgagtatcagttttttcagtaccttcattactgtagtagttttgctgctgaggactcttatctatttgtgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG