1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtctgtattgtgtgcatcttcttttgctttgcattgttatgtgctgtacatcttttgctttgcatttatatgtcctaagcttgttttgttttgcttgaagGTCAATAGTTCAGACCAAATCAGTAGTGGTTTGAAGAGGACAAACTTTCAACCAAAATATGGAGGAATAAAGGATGTTTTTCGAGGTGTTTATTCAGAAG
species | Oryza sativa |
transcript | LOC_Os01g51250.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTACTTATCCCTTGGATCTGGCTAGGACTAAACTTGCCTTCCAG GTCAATAGTTCAGACCAAATCAGTAGTGGTTTGAAGAGGACAAACTTTCAAEST: gi|29674838|gb|CB671113.1|CB671113
genomic: GTACTTATCCCTTGGATCTGGCTAGGACTAAACTTGCCTTCCAGgtattgcaat ... ttgcttgaagGTCAATAGTTCAGACCAAATCAGTAGTGGTTTGAAGAGGACAAACTTTCAA
EST: TGTTGTGTACTTATCCCTTGGATCTGGCTAGGACTAAACTTGCCTTCCAG GTCAATAGTTCAGACCAAATCAGTAGTGGTTTGAAGAGGACAAACTTTCAAEST: gi|38472214|gb|CF956345.1|CF956345
genomic: TGTTGTGTACTTATCCCTTGGATCTGGCTAGGACTAAACTTGCCTTCCAGgtattgcaat ... ttgcttgaagGTCAATAGTTCAGACCAAATCAGTAGTGGTTTGAAGAGGACAAACTTTCAA
EST: TGTTGTGTACTTATCCCTTGGATCTGGCTAGGACTAAACTTGCCTTCCAG GTCAATAGTTCAGACCAAATCAGTAEST: gi|157651895|gb|EX451529.1|EX451529
genomic: TGTTGTGTACTTATCCCTTGGATCTGGCTAGGACTAAACTTGCCTTCCAGgtattgcaat ... ttgcttgaagGTCAATAGTTCAGACCAAATCAGTA
EST: GTACTTATCCCTTGGATCTGGCTAGGACTAAACTTGCCTTCCAG GTCAATAGTTCAGACCAAATCAGTAGTGGTTTGAAGAGGACAAACTTTCAAEST: gi|33683570|gb|CF311809.1|CF311809
genomic: GTACTTATCCCTTGGATCTGGCTAGGACTAAACTTGCCTTCCAGgtattgcaat ... ttgcttgaagGTCAATAGTTCAGACCAAATCAGTAGTGGTTTGAAGAGGACAAACTTTCAA
EST: TGTTGTGTACTTATCCCTTGGATCTGGCTAGGACTAAACTTGCCTTCCAG GTCAATAGTTCAGACCAAATCAGTAGTGGTTTGAAGAGGACAAACTTTCAA
genomic: TGTTGTGTACTTATCCCTTGGATCTGGCTAGGACTAAACTTGCCTTCCAGgtattgcaat ... ttgcttgaagGTCAATAGTTCAGACCAAATCAGTAGTGGTTTGAAGAGGACAAACTTTCAA
gtacatcttttgctttgcatttatatgtcctaagcttgttttgttttgcttgaagGTCAATAGTTCAGACCAAATCAGTAGTGGTTTGAAGAGGACAAACTTTCAACCAAAATATGGAGGAATAAAGGATGTTTTTCGAGGTGTTTATTCAGAAG
ttttgtttt CT-rich tract
atttatatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtattgtgtgcatcttcttttgctttgcattgttatgtgctgtacatcttttgctttgcatttatatgtcctaagcttgttttgttttgcttgaagGTCAATAGTTCAGACCAAATCAGTAGTGGTTTGAAGAGGACAAACTTTCAACCAAAATATGGAGGAATAAAGGATGTTTTTCGAGGTGTTTATTCAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- -tgtattg
- - - - - -gtgcatc
- - - - - - - - - -tcttttg
- - - - - - - - - - - - - ctttgca
- - - - - - - - - - - - - - - - - - - - gtgctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttg