1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttgtcaaacttcatattgtatttcttttggtacaagtaggccttgatactattcttgtttgaacagGTTCATTTCGGTGCCCAAGGACATGGGAGCATTCAATTGTGGAGCTTTTGTTGCAGGAATCGTAAGG
species | Oryza sativa |
transcript | LOC_Os01g51220.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATGATTAGTGAAAAGGAGCTTCTTGTTAACCG GTTCATTTCGGTGCCCAAGGACATGGGAGCATTCAATTGTGGAGCTTTTGTEST: gi|87031904|gb|CI268133.1|CI268133
genomic: CATGATTAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtcaaa ... gtttgaacagGTTCATTTCGGTGCCCAAGGACATGGGAGCATTCAATTGTGGAGCTTTTGT
EST: GAACATGAGGATGAATACATGATTAGTGAAAAGGAGCTTCTTGTTAACCG GTTCATTTCGGTGCCCAAGGACATGGGAGCATTCAATTGTGGAGCTTTTGTEST: gi|88488420|gb|CI425691.1|CI425691
genomic: GAACATGAGGATGAATACATGATTAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtcaaa ... gtttgaacagGTTCATTTCGGTGCCCAAGGACATGGGAGCATTCAATTGTGGAGCTTTTGT
EST: TGAAAAGGAGCTTCTTGTTAACCG GTTCATTTCGGTGCCCAAGGACATGGGAGCATTCAATTGTGGAGCTTTTGTEST: gi|88484151|gb|CI421422.1|CI421422
genomic: TGAAAAGGAGCTTCTTGTTAACCGgtttgtcaaa ... gtttgaacagGTTCATTTCGGTGCCCAAGGACATGGGAGCATTCAATTGTGGAGCTTTTGT
EST: GTGAAAAGGAGCTTCTTGTTAACCG GTTCATTTCGGTGCCCAAGGACATGGGAGCATTCAATTGTGGAGCTTTTGTEST: gi|88243947|gb|CI243069.1|CI243069
genomic: GTGAAAAGGAGCTTCTTGTTAACCGgtttgtcaaa ... gtttgaacagGTTCATTTCGGTGCCCAAGGACATGGGAGCATTCAATTGTGGAGCTTTTGT
EST: GAACATGAGGATGAATACATGATTAGTGAAAAGGAGCTTCTTGTTAACCG GTTCATTTCGGTGCCCAAGGACATGGGAGCATTCAATTGTGGAGCTTTTGTEST: gi|88516373|gb|CI444027.1|CI444027
genomic: GAACATGAGGATGAATACATGATTAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtcaaa ... gtttgaacagGTTCATTTCGGTGCCCAAGGACATGGGAGCATTCAATTGTGGAGCTTTTGT
EST: ATGAGGATGAATACATGATTAGTGAAAAGGAGCTTCTTGTTAACCG GTTCATTTCGGTGCCCAAGGACATGGGAGCATTCAATTGTGGAGCTTTTGTEST: gi|88520758|gb|CI446414.1|CI446414
genomic: ATGAGGATGAATACATGATTAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtcaaa ... gtttgaacagGTTCATTTCGGTGCCCAAGGACATGGGAGCATTCAATTGTGGAGCTTTTGT
EST: ATGAATACATGATTAGTGAAAAGGAGCTTCTTGTTAACCG GTTCATTTCGGTGCCCAAGGACATGGGAGCATTCAATTGTGGAGCTTTTGTEST: gi|12622960|gb|AU173173.1|AU173173
genomic: ATGAATACATGATTAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtcaaa ... gtttgaacagGTTCATTTCGGTGCCCAAGGACATGGGAGCATTCAATTGTGGAGCTTTTGT
EST: ATGATTAGTGAAAAGGAGCTTCTTGTTAACCG GTTCATTTCGGTGCCCAAGGACATGGGAGCATTCAATTGTGGAGCTTTTGTEST: gi|88281957|gb|CI403353.1|CI403353
genomic: ATGATTAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtcaaa ... gtttgaacagGTTCATTTCGGTGCCCAAGGACATGGGAGCATTCAATTGTGGAGCTTTTGT
EST: CTTCTTGTTAACCG GTTCATTTCGGTGCCCAAGGACATGGGAGCATTCAATTGTGGAGCTTTTGTEST: gi|88519872|gb|CI447526.1|CI447526
genomic: CTTCTTGTTAACCGgtttgtcaaa ... gtttgaacagGTTCATTTCGGTGCCCAAGGACATGGGAGCATTCAATTGTGGAGCTTTTGT
EST: TGAATACATGATTAGTGAAAAGGAGCTTCTTGTTAACCG GTTCATTTCGGTGCCCAAGGACATGGGAGCATTCAATTGTGGAGCTTTTGT
genomic: TGAATACATGATTAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtcaaa ... gtttgaacagGTTCATTTCGGTGCCCAAGGACATGGGAGCATTCAATTGTGGAGCTTTTGT
catattgtatttcttttggtacaagtaggccttgatactattcttgtttgaacagGTTCATTTCGGTGCCCAAGGACATGGGAGCATTCAATTGTGGAGCTTTTGTTGCAGGAATCGTAAGG
ccttgat putative branch site (score: 33)
ttcttgttt putative PPT
tatttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtcaaacttcatattgtatttcttttggtacaagtaggccttgatactattcttgtttgaacagGTTCATTTCGGTGCCCAAGGACATGGGAGCATTCAATTGTGGAGCTTTTGTTGCAGGAATCGTAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT