1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtatgcagtttgtgtgttttacaggttctggcaaataattttagttccttacctgtttaggtgttgtatttgcttaatgaatgttttgtgtatttgatagGTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAACCAGACACAGGTTGATAACATTGCTGAGCTGGAAAGAAG
species | Oryza sativa |
transcript | LOC_Os01g51220.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAG GTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAACEST: gi|88303013|gb|CI668859.1|CI668859
genomic: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAGgtactcactg ... tatttgatagGTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAAC
EST: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAG GTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAACEST: gi|88347620|gb|CI634305.1|CI634305
genomic: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAGgtactcactg ... tatttgatagGTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAAC
EST: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAG GTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAACEST: gi|88336811|gb|CI644238.1|CI644238
genomic: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAGgtactcactg ... tatttgatagGTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAAC
EST: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAG GTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAACEST: gi|88356314|gb|CI652718.1|CI652718
genomic: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAGgtactcactg ... tatttgatagGTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAAC
EST: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAG GTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAACEST: gi|88338206|gb|CI633325.1|CI633325
genomic: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAGgtactcactg ... tatttgatagGTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAAC
EST: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAG GTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAACEST: gi|88575096|gb|CI666865.1|CI666865
genomic: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAGgtactcactg ... tatttgatagGTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAAC
EST: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAG GTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAACEST: gi|88305183|gb|CI651980.1|CI651980
genomic: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAGgtactcactg ... tatttgatagGTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAAC
EST: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAG GTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAACEST: gi|109974426|gb|DT806902.1|DT806902
genomic: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAGgtactcactg ... tatttgatagGTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAAC
EST: GCCAACGTGTTCTACAAGCCCCTCAGCCGCGGCAAGCAGGAG GTCAGTTTGAGTGCATTTGCGCTCCTGTTCTCAGAGTTGGCTCAATACAACEST: gi|88575793|gb|CI669938.1|CI669938
genomic: GCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAGgtactcactg ... tatttgatagGTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAAC
EST: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAG GTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAACEST: gi|163929185|gb|EG713058.1|EG713058
genomic: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAGgtactcactg ... tatttgatagGTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAAC
EST: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAG GTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAACEST: gi|88719072|gb|CI742582.1|CI742582
genomic: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAGgtactcactg ... tatttgatagGTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAAC
EST: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAG GTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAACEST: gi|88381600|gb|CI682265.1|CI682265
genomic: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAGgtactcactg ... tatttgatagGTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAAC
EST: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAG GTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAACEST: gi|88327973|gb|CI648377.1|CI648377
genomic: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAGgtactcactg ... tatttgatagGTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAAC
EST: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAG GTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAACEST: gi|88308467|gb|CI650876.1|CI650876
genomic: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAGgtactcactg ... tatttgatagGTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAAC
EST: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAG GTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAAC
genomic: AGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAGgtactcactg ... tatttgatagGTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAAC
tccttacctgtttaggtgttgtatttgcttaatgaatgttttgtgtatttgatagGTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAACCAGACACAGGTTGATAACATTGCTGAGCTGGAAAGAAG
ttaatgaatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcagtttgtgtgttttacaggttctggcaaataattttagttccttacctgtttaggtgttgtatttgcttaatgaatgttttgtgtatttgatagGTCAGTTTGAGTGCATTTGCGTTCCTGTTCTCAGAGTTGGTTCAATACAACCAGACACAGGTTGATAACATTGCTGAGCTGGAAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
gtatgca
- - - - - - tgtgttt
- - - - - - - - - - - -ggttctg
- - - - - - - - - - - - - - - gcaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttg