1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttcaaagttcaaattatttgtgttatgctgtcaccccaaccatttatgttttcctgcacatctctgacccccactaatactgaacaatattgtgaatcagTGGAATGCCTGAGTGCAAACTTGGATTGAACGATAGGGTTCTTTTGGAGGCTCAAGGCCGAGCTACTAAAGGAAAAGCAATAGATCTTGATGATATTAAA
species | Oryza sativa |
transcript | LOC_Os01g50770.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTGTGAGATCAGATGTTGTTGGGGCACTGAAGATGCGGACATATTTGAG TGGAATGCCTGAGTGCAAACTTGGATTGAACGATAGGGTTCTTTTGGAGGCEST: gi|58589259|gb|CF987567.1|CF987567
genomic: ATTGTGAGATCAGATGTTGTTGGGGCACTGAAGATGCGGACATATTTGAGgtgagcctac ... tgtgaatcagTGGAATGCCTGAGTGCAAACTTGGATTGAACGATAGGGTTCTTTTGGAGGC
EST: ATTGTGAGATCAGATGTTGTTGGGGCACTGAAGATGCGGACATATTTGAG TGGAATGCCTGAGTGCAAACTTGGATTGAACGATAGGGTTCTTTTGGAGGCEST: gi|33793248|gb|CF322504.1|CF322504
genomic: ATTGTGAGATCAGATGTTGTTGGGGCACTGAAGATGCGGACATATTTGAGgtgagcctac ... tgtgaatcagTGGAATGCCTGAGTGCAAACTTGGATTGAACGATAGGGTTCTTTTGGAGGC
EST: ATTGTGAGATCAGATGTTGTTGGGGCACTGAAGATGCGGACATATTTGAG TGGAATGCCTGAGTGCAAACTTGGATTGAACGATAGGGTTCTTTTGGAGGCEST: gi|58673470|gb|CK062156.1|CK062156
genomic: ATTGTGAGATCAGATGTTGTTGGGGCACTGAAGATGCGGACATATTTGAGgtgagcctac ... tgtgaatcagTGGAATGCCTGAGTGCAAACTTGGATTGAACGATAGGGTTCTTTTGGAGGC
EST: ATTGTGAGATCAGATGTTGTTGGGGCACTGAAGATGCGGACATATTTGAG TGGAATGCCTGAGTGCAAACTTGGATTGAACGATAGGGTACTTTTGGAGGCEST: gi|27554506|gb|CA998406.1|CA998406
genomic: ATTGTGAGATCAGATGTTGTTGGGGCACTGAAGATGCGGACATATTTGAGgtgagcctac ... tgtgaatcagTGGAATGCCTGAGTGCAAACTTGGATTGAACGATAGGGTTCTTTTGGAGGC
EST: ATTGTGAGATCAGATGTTGTTGGGGCACTGAAGATGCGGACATATTTGAG TGGAATGCCTGAGTGCAAACTTGGATTGAACGATAGGGTTCTTTTGGAGGC
genomic: ATTGTGAGATCAGATGTTGTTGGGGCACTGAAGATGCGGACATATTTGAGgtgagcctac ... tgtgaatcagTGGAATGCCTGAGTGCAAACTTGGATTGAACGATAGGGTTCTTTTGGAGGC
atgttttcctgcacatctctgacccccactaatactgaacaatattgtgaatcagTGGAATGCCTGAGTGCAAACTTGGATTGAACGATAGGGTTCTTTTGGAGGCTCAAGGCCGAGCTACTAAAGGAAAAGCAATAGATCTTGATGATATTAAA
cactaat putative branch site (score: 2)
aacaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcaaagttcaaattatttgtgttatgctgtcaccccaaccatttatgttttcctgcacatctctgacccccactaatactgaacaatattgtgaatcagTGGAATGCCTGAGTGCAAACTTGGATTGAACGATAGGGTTCTTTTGGAGGCTCAAGGCCGAGCTACTAAAGGAAAAGCAATAGATCTTGATGATATTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA