1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTGTTCAAGCACTATTTCGAAGAGTTGGAGGAAGAGTCGCTGAGGGATAACTTTGTCGTTGTGgtaagtaatggtgcaagcagctaagcatcactctggtttgctgcacaatctactggatttgacacaagatggtgtttgatttgtgcctgcag
species | Oryza sativa |
transcript | LOC_Os01g50770.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATTTCGAAGAGTTGGAGGAAGAGTCGCTGAGGGATAACTTTGTCGTTGTG TATGAGTTGCTTGATGAAATGATGGATTTTGGGEST: gi|33793248|gb|CF322504.1|CF322504
genomic: ATTTCGAAGAGTTGGAGGAAGAGTCGCTGAGGGATAACTTTGTCGTTGTGgtaagtaatg ... gtgcctgcagTATGAGTTGCTTGATGAAATGATGGATTTTGGG
EST: ATTTCGAAGAGTTGGAGGAAGAGTCGCTGAGGGATAACTTTGTCGTTGTG TATGAGTTGCTTGATGAAATGATGGATTTTGGGTACCCACAATACACGGAGEST: gi|58673470|gb|CK062156.1|CK062156
genomic: ATTTCGAAGAGTTGGAGGAAGAGTCGCTGAGGGATAACTTTGTCGTTGTGgtaagtaatg ... gtgcctgcagTATGAGTTGCTTGATGAAATGATGGATTTTGGGTACCCACAATACACGGAG
EST: ATTTCGAAGAGTTGGAGGAAGAGTCGCTGAGGGATAACTTTGTCGTTGTG TATGAGTTGCTTGATGAAATGATGGATTTTGGGTACCCACAATACACGGAGEST: gi|58665060|gb|CK053746.1|CK053746
genomic: ATTTCGAAGAGTTGGAGGAAGAGTCGCTGAGGGATAACTTTGTCGTTGTGgtaagtaatg ... gtgcctgcagTATGAGTTGCTTGATGAAATGATGGATTTTGGGTACCCACAATACACGGAG
EST: ATTTCGAAGAGTTGGAGGAAGAGTCGCTGAGGGATAACTTTGTCGTTGTG TATGAGTTGCTTGATGAAATGATGGATTTTGGGTACCCACAATACACGGAG
genomic: ATTTCGAAGAGTTGGAGGAAGAGTCGCTGAGGGATAACTTTGTCGTTGTGgtaagtaatg ... gtgcctgcagTATGAGTTGCTTGATGAAATGATGGATTTTGGGTACCCACAATACACGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTCAAGCACTATTTCGAAGAGTTGGAGGAAGAGTCGCTGAGGGATAACTTTGTCGTTGTGgtaagtaatggtgcaagcagctaagcatcactctggtttgctgcacaatctactggatttgacacaagatggtgtttgatttgtgcctgcag
- - - - - - - - CGAAGA
- - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - GGAAGA