1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CGCCTCCGGGCAGCTCCAGCCCACCACCAGGGAGGAGGGGCACACGACGCTCGGCGAGACGTTGCGCCGCTCCGGCAAATCCAGCTCCAGCTCCAGCTCGgtaacttctctttctagtcgttgtgttcttgattaattttgtcgatgggctgactgacttgatgagcgcgtgcccag
species | Oryza sativa |
transcript | LOC_Os01g50700.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TCGGCGAGACGTTGCGCCGCTCCGGCAAATCCAGCTCCAGCTCCAGCTCG TCGTCGGAGGATGACGGGCAAGGTGGGCGGAGGAAGAAGAAGAGCATEST: gi|218487989|gb|FG954434.1|FG954434
genomic: TCGGCGAGACGTTGCGCCGCTCCGGCAAATCCAGCTCCAGCTCCAGCTCGgtaacttctc ... gcgtgcccagTCGTCGGAGGATGACGGGCAAGGTGGGCGGAGGAAGAAGAAGAGCAT
EST: TCGGCGAGACGTTGCGCCGCTCCGGCAAATCCAGCTCCAGCTCCAGCTCG TCGTCGGAGGATGACGGGCAAGGTGGGCGGAGGAAEST: gi|88212082|gb|CI211722.1|CI211722
genomic: TCGGCGAGACGTTGCGCCGCTCCGGCAAATCCAGCTCCAGCTCCAGCTCGgtaacttctc ... gcgtgcccagTCGTCGGAGGATGACGGGCAAGGTGGGCGGAGGAA
EST: TCGGCGAGACGTTGCGCCGCTCCGGCAAATCCAGCTCCAGCTCCAGCTCG TCGTCGGAGGATGACGGGCAAGGTGGGCGGAGGAAGAAGAAGAGCATCAAGEST: gi|86531518|gb|CI171724.1|CI171724
genomic: TCGGCGAGACGTTGCGCCGCTCCGGCAAATCCAGCTCCAGCTCCAGCTCGgtaacttctc ... gcgtgcccagTCGTCGGAGGATGACGGGCAAGGTGGGCGGAGGAAGAAGAAGAGCATCAAG
EST: TCGGCGAGACGTTGCGCCGCTCCGGCAAATCCAGCTCCAGCTCCAGCTCG TCGTCGGAGGATGACGGGCAAGGTGGGCGGAGGAAGAAGAAGAGCATCAAGEST: gi|218491247|gb|FG945234.1|FG945234
genomic: TCGGCGAGACGTTGCGCCGCTCCGGCAAATCCAGCTCCAGCTCCAGCTCGgtaacttctc ... gcgtgcccagTCGTCGGAGGATGACGGGCAAGGTGGGCGGAGGAAGAAGAAGAGCATCAAG
EST: TCGGCGAGACGTTGCGCCGCTCCGGCAAATCCAGCTCCAGCTCCAGCTCG TCGTCGGAGGATGACGGGCAAGGTGGGCGGAGGAAGAAGAAGAGCATCAAEST: gi|218481483|gb|FG961216.1|FG961216
genomic: TCGGCGAGACGTTGCGCCGCTCCGGCAAATCCAGCTCCAGCTCCAGCTCGgtaacttctc ... gcgtgcccagTCGTCGGAGGATGACGGGCAAGGTGGGCGGAGGAAGAAGAAGAGCATCAA
EST: TCGGCGAGACGTTGCGCCGCTCCGGCAAATCCAGCTCCAGCTCCAGCTCG TCGTCGGAGGATGACGGGCAAGGTGGGCGGAGGAAGAAGAAGAGCATCAAG
genomic: TCGGCGAGACGTTGCGCCGCTCCGGCAAATCCAGCTCCAGCTCCAGCTCGgtaacttctc ... gcgtgcccagTCGTCGGAGGATGACGGGCAAGGTGGGCGGAGGAAGAAGAAGAGCATCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCTCCGGGCAGCTCCAGCCCACCACCAGGGAGGAGGGGCACACGACGCTCGGCGAGACGTTGCGCCGCTCCGGCAAATCCAGCTCCAGCTCCAGCTCGgtaacttctctttctagtcgttgtgttcttgattaattttgtcgatgggctgactgacttgatgagcgcgtgcccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC