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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtggttcttggcccgagatcgagaacgctggcatatttgtttttcttgtgtttttttttctttcgtgcaatgtttgttgttgggttcatggtttcagctgttcttgcaatgtttgggtttctgtagGCCAAGTTGGTGCACCCTGACAAGAATCCCAATAACCCTGATGCGGAGCGGAGGTTCAAG

Basic information

species Oryza sativa
transcript LOC_Os01g50700.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|25803380|gb|CA759341.1|CA759341
EST:     TCAGCACAGACGCCTCCGCGGCAGAGATCAAGAAGGCGTATTACCTCAAG                         GCCAAGTTGGTGCACCCTGACAAGAATCCCGATAACCCTGATGCGGAGCGG
genomic: TCAGCACAGACGCCTCCGCGGCAGAGATCAAGAAGGCGTATTACCTCAAGgtgcgtggtt ... gtttctgtagGCCAAGTTGGTGCACCCTGACAAGAATCCCAATAACCCTGATGCGGAGCGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgttgttgggttcatggtttcagctgttcttgcaatgtttgggtttctgtagGCCAAGTTGGTGCACCCTGACAAGAATCCCAATAACCCTGATGCGGAGCGGAGGTTCAAG
                                              tttctgt  CT-rich tract
                                    aatgttt  TA-rich tract