1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
AAGAGGATTCTGATGGCAAGGCTCTTATGAAAGCACGGCGATCTGCTGGATCAATGAGTGCCTTTTCTGGATCGGGGGGAATGGTCTACATGGAGTACAGgtgcttcttctttccgcttatatttcgtttttacgtcaattatttgatttcattattctatttactcaattctaacttgtgagctcttttcatccag
species | Oryza sativa |
transcript | LOC_Os01g49680.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: TCAATGAGTGCCTTTTCTGGATCGGGGGGAATGGTCTACATGGAGTACAG CACTGGTAAGGGGAAGGCTGGAGCTTCCAAGAAACCGAAGGACCCTTCAAAEST: gi|86429880|gb|CI082303.1|CI082303
genomic: TCAATGAGTGCCTTTTCTGGATCGGGGGGAATGGTCTACATGGAGTACAGgtgcttcttc ... tttcatccagCACTGGTAAGGGGAAGGCTGGAGCTTCCAAGAAACCGAAGGACCCTTCAAA
EST: TCAATGAGTGCCTTTTCTGGATCGGGGGGAATGGTCTACATGGAGTACAG CACTGGTAAGGGGAAGGCTGGAGCTTCCAAGAAACCGAAGGACCCTTCAAAEST: gi|86436817|gb|CI118539.1|CI118539
genomic: TCAATGAGTGCCTTTTCTGGATCGGGGGGAATGGTCTACATGGAGTACAGgtgcttcttc ... tttcatccagCACTGGTAAGGGGAAGGCTGGAGCTTCCAAGAAACCGAAGGACCCTTCAAA
EST: TCAATGAGTGCCTTTTCTGGATCGGGGGGAATGGTCTACATGGAGTACAG CACTGGTAAGGGGAAGGCTGGAGCTTCCAAGAAACCGAAGGACCCTTCAAAEST: gi|88840635|gb|CI080089.1|CI080089
genomic: TCAATGAGTGCCTTTTCTGGATCGGGGGGAATGGTCTACATGGAGTACAGgtgcttcttc ... tttcatccagCACTGGTAAGGGGAAGGCTGGAGCTTCCAAGAAACCGAAGGACCCTTCAAA
EST: TCAATGAGTGCCTTTTCTGGATCGGGGGGAATGGTCTACATGGAGTACAG CACTGGTAAGGGGAAGGCTGGAGCTTCCAAGAAACCGAAGGACCCTTCAAAEST: gi|88273512|gb|CI393918.1|CI393918
genomic: TCAATGAGTGCCTTTTCTGGATCGGGGGGAATGGTCTACATGGAGTACAGgtgcttcttc ... tttcatccagCACTGGTAAGGGGAAGGCTGGAGCTTCCAAGAAACCGAAGGACCCTTCAAA
EST: TCAATGAGTGCCTTTTCTGGATCGGGGGGAATGGTCTACATGGAGTACAG CACTGGTAAGGGGAAGGCTGGAGCTTCCAAGAAACCGAAGGACCCTTCAAAEST: gi|88237537|gb|CI237386.1|CI237386
genomic: TCAATGAGTGCCTTTTCTGGATCGGGGGGAATGGTCTACATGGAGTACAGgtgcttcttc ... tttcatccagCACTGGTAAGGGGAAGGCTGGAGCTTCCAAGAAACCGAAGGACCCTTCAAA
EST: GATCGGGGGGAATGGTCTACATGGAGTACAG CACTGGTAAGGGGAAGGCTGGAGCTTCCAAGAAACCGAAGGACCCTTCAAAEST: gi|88538119|gb|CI467121.1|CI467121
genomic: GATCGGGGGGAATGGTCTACATGGAGTACAGgtgcttcttc ... tttcatccagCACTGGTAAGGGGAAGGCTGGAGCTTCCAAGAAACCGAAGGACCCTTCAAA
EST: GGGGAATGGTCTACATGGAGTACAG CACTGGTAAGGGGAAGGCTGGAGCTTCCAAGAAACCGAAGGACCCTTCAAAEST: gi|88546647|gb|CI476308.1|CI476308
genomic: GGGGAATGGTCTACATGGAGTACAGgtgcttcttc ... tttcatccagCACTGGTAAGGGGAAGGCTGGAGCTTCCAAGAAACCGAAGGACCCTTCAAA
EST: TACATGGAGTACAG CACTGGTAAGGGGAAGGCTGGAGCTTCCAAGAAACCGAAGGACCCTTCAAAEST: gi|88837577|gb|CI078937.1|CI078937
genomic: TACATGGAGTACAGgtgcttcttc ... tttcatccagCACTGGTAAGGGGAAGGCTGGAGCTTCCAAGAAACCGAAGGACCCTTCAAA
EST: TCAATGAGTGCCTTTTCTGGATCGGGGGGAATGGTCTACATGGAGTACAG CACTGGTAAGGGGAAGGCTGGAGCTTCCAAGAAACCGAAGGACCCTTCAAAEST: gi|88955642|gb|CI091931.1|CI091931
genomic: TCAATGAGTGCCTTTTCTGGATCGGGGGGAATGGTCTACATGGAGTACAGgtgcttcttc ... tttcatccagCACTGGTAAGGGGAAGGCTGGAGCTTCCAAGAAACCGAAGGACCCTTCAAA
EST: TCAATGAGTGCCTTTTCTGGATCGGGGGGAATGGTCTACATGGAGTACAG CACTGGTAAGGGGAAGGCTGGAGCTTCCAAGAAACCGAAGGACCCTTCAAAEST: gi|88381393|gb|CI528373.1|CI528373
genomic: TCAATGAGTGCCTTTTCTGGATCGGGGGGAATGGTCTACATGGAGTACAGgtgcttcttc ... tttcatccagCACTGGTAAGGGGAAGGCTGGAGCTTCCAAGAAACCGAAGGACCCTTCAAA
EST: TGGTTTACATGGAGTACAG CACTGGTAAGGGGAAGGCTGGAGCTTCCAAGAAACCGAAGGACCCTTCAAA
genomic: TGGTCTACATGGAGTACAGgtgcttcttc ... tttcatccagCACTGGTAAGGGGAAGGCTGGAGCTTCCAAGAAACCGAAGGACCCTTCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAGGATTCTGATGGCAAGGCTCTTATGAAAGCACGGCGATCTGCTGGATCAATGAGTGCCTTTTCTGGATCGGGGGGAATGGTCTACATGGAGTACAGgtgcttcttctttccgcttatatttcgtttttacgtcaattatttgatttcattattctatttactcaattctaacttgtgagctcttttcatccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA