1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
CCATGTTGAGAGGACGAGAATTCTGCATCAATTCAAGAACAGCTCAGATGTGAATACAATTTTCCTTTCAAAGgtgcagtaactgatattctgattcaaaacatacttttgtaaattcaaccatcatcatcttaactgcatatctactgtcacttag
species | Oryza sativa |
transcript | LOC_Os01g49680.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TGCATCACTTCAAGAACAGCTCAGATGTGAATACAATTTTCCTTTCAAAG GTGGGTGATAACTCGATTGATATTCCAGAAGCAAATGTGATCATACAAATTEST: gi|58684576|gb|CK073263.1|CK073263
genomic: TGCATCAATTCAAGAACAGCTCAGATGTGAATACAATTTTCCTTTCAAAGgtgcagtaac ... tgtcacttagGTGGGTGATAACTCGATTGATATTCCAGAAGCAAATGTGATCATACAAATT
EST: TGCATCAATTCAAGAACAGCTCAGATGTGAATACAATTTTCCTTTCAAAG GTGGGTGATAACTCGATTGATATTCCAGAAGCAAATGTGATCATACAAATT
genomic: TGCATCAATTCAAGAACAGCTCAGATGTGAATACAATTTTCCTTTCAAAGgtgcagtaac ... tgtcacttagGTGGGTGATAACTCGATTGATATTCCAGAAGCAAATGTGATCATACAAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATGTTGAGAGGACGAGAATTCTGCATCAATTCAAGAACAGCTCAGATGTGAATACAATTTTCCTTTCAAAGgtgcagtaactgatattctgattcaaaacatacttttgtaaattcaaccatcatcatcttaactgcatatctactgtcacttag
- - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - CAGATG