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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttttggttcctctaaaataagttacacttttatgcagcattcaatattataagttctttctatggatatgaaataccataagccttgttctttgattagGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAAGATATCATTCAAATAGAGAAATGGATTTCTGAGGCATACAAAGCCATTG

Basic information

species Oryza sativa
transcript LOC_Os01g48690.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88979057|gb|CI025568.1|CI025568
EST:     GCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAG                         GTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAA
genomic: GCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGgtagtacata ... ctttgattagGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAA
EST: gi|87026725|gb|CI254831.1|CI254831
EST:     GCCGAGATGCGCACCAGGATGAAGAAG                         GTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAA
genomic: GCCGAGATGCGCACCAGGATGAAGAAGgtagtacata ... ctttgattagGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAA
EST: gi|38479044|gb|CF963177.1|CF963177
EST:     GCATCCGCAAGCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAG                         GTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAA
genomic: GCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGgtagtacata ... ctttgattagGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAA
EST: gi|58593663|gb|CF991971.1|CF991971
EST:     GCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAG                         GTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAA
genomic: GCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGgtagtacata ... ctttgattagGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAA
EST: gi|88832144|gb|CI017378.1|CI017378
EST:     GCCGAGATGCGCACCAGGATGAAGAAG                         GTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAA
genomic: GCCGAGATGCGCACCAGGATGAAGAAGgtagtacata ... ctttgattagGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAA
EST: gi|29683529|gb|CB679804.1|CB679804
EST:     GCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAG                         GTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAA
genomic: GCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGgtagtacata ... ctttgattagGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAA
EST: gi|58687164|gb|CK075851.1|CK075851
EST:     GCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAG                         GTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAA
genomic: GCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGgtagtacata ... ctttgattagGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAA
EST: gi|89197010|gb|CI021850.1|CI021850
EST:     AGGATGAAGAAG                         GTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAA
genomic: AGGATGAAGAAGgtagtacata ... ctttgattagGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAA
EST: gi|88850996|gb|CI096386.1|CI096386
EST:     GCCGAGATGCGCACCAGGATGAAGAAG                         GTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAA
genomic: GCCGAGATGCGCACCAGGATGAAGAAGgtagtacata ... ctttgattagGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAA
EST: gi|88995204|gb|CI036779.1|CI036779
EST:     AGATGCGCACCAGGATGAAGAAG                         GTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAA
genomic: AGATGCGCACCAGGATGAAGAAGgtagtacata ... ctttgattagGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAA
EST: gi|87018585|gb|CI252339.1|CI252339
EST:     GCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAG                         GTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAA
genomic: GCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGgtagtacata ... ctttgattagGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAA
EST: gi|7332357|gb|AU085703.1|AU085703
EST:     GCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAG                         GTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAA
genomic: GCATCCGCAACCATGCACGCAAGGCCGAGATGCGCACCAGGATGAAGAAGgtagtacata ... ctttgattagGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAA
EST: gi|89169416|gb|CI038425.1|CI038425
EST:     GATGCGCACCAGGATGAAGAAG                         GTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAA
genomic: GATGCGCACCAGGATGAAGAAGgtagtacata ... ctttgattagGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattataagttctttctatggatatgaaataccataagccttgttctttgattagGTTTTGAAAGCCCTTGAAAAGCTGAGAAAGAAAGCTGATGCCACACCTGAAGATATCATTCAAATAGAGAAATGGATTTCTGAGGCATACAAAGCCATTG
                                      ccttgttcttt  CT-rich tract
                     atatgaaata  TA-rich tract