Sequence
atgc intronic sequence ATGC exonic sequencegtaccacctccctctctctctctcctcgagagtgttcttcctttgctcttattcgtcggtgatgcgaaatgccttgttcagGTGGGATCGGGGCATGGGCGGCGGCGACGCCGGCGTCGTCGGGGAGGTGGAGGAGGAGGGGACTGGAGGTGGTGTGCGAGGCGGCCAAGACCGGCACCGC
Basic information
species | Oryza sativa |
transcript | LOC_Os01g48690.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58593663|gb|CF991971.1|CF991971EST: CGTCTCCCCGCGGGCCCGCCTGTCCGCCTCCTACGCCGCCTTCCCCATCG GTGGGCTCGGGGCATGGGCGGCGGCGACGCCGGCGTCGTCGGGGAGGTGGA
genomic: CGTCTCCCCGCGGGCCCGCCTGTCCGCCTCCTACGCCGCCTTCCCCATCGgtaccacctc ... ccttgttcagGTGGGATCGGGGCATGGGCGGCGGCGACGCCGGCGTCGTCGGGGAGGTGGA
EST:
gi|58687164|gb|CK075851.1|CK075851EST: GGCCCGCCTGTCCGCCTCCTACGCCGCCTTCCCCATCG GTGGGCTCGGGGCATGGGCGGCGGCGACGCCGGCGTCGTCGGGGAGGTGGA
genomic: GGCCCGCCTGTCCGCCTCCTACGCCGCCTTCCCCATCGgtaccacctc ... ccttgttcagGTGGGATCGGGGCATGGGCGGCGGCGACGCCGGCGTCGTCGGGGAGGTGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgagagtgttcttcctttgctcttattcgtcggtgatgcgaaatgccttgttcagGTGGGATCGGGGCATGGGCGGCGGCGACGCCGGCGTCGTCGGGGAGGTGGAGGAGGAGGGGACTGGAGGTGGTGTGCGAGGCGGCCAAGACCGGCACCGC
ccttgttc CT-rich tract
tcttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaccacctccctctctctctctcctcgagagtgttcttcctttgctcttattcgtcggtgatgcgaaatgccttgttcagGTGGGATCGGGGCATGGGCGGCGGCGACGCCGGCGTCGTCGGGGAGGTGGAGGAGGAGGGGACTGGAGGTGGTGTGCGAGGCGGCCAAGACCGGCACCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -CGGCGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGCCGGCG