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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGGCGAGAGGGGTGCCCATGGCTGACATCGTGCACCTCGACATGGAGATGAAGTGGTTTCGTGATCTGCTGAAACTGCTCTGCCCCGGCGACCTGGCCGgtatgttgatataatccctcctctctctctacccacctttgacgatgacattttcaactagcgatatgaaatcgtagcagtagactagtagtttggtggg...

Basic information

species Oryza sativa
transcript LOC_Os01g46080.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66913979|gb|CX100827.1|CX100827
EST:     GAAGTGGTTTCGTGATCTGCTGAAACTGCTCTGCCCCGGCGACCTGGCCG                         GTTGCACAGGCATGATGAATCAATCTCTTTTCCTGGTCGGAGAAATTGGGG
genomic: GAAGTGGTTTCGTGATCTGCTGAAACTGCTCTGCCCCGGCGACCTGGCCGgtatgttgat ... tattgcacagGTTGCACAGGCATGATGAATCAATCTCTTTTCCTGGTCGGAGAAATTGGGG
EST: gi|29662778|gb|CB659053.1|CB659053
EST:     GAAGTGGTTTCGTGATCTGCTGAAACTGCTCTGCCCCGGCGACCTGGCCG                         GTTGCACAGGCATGATGAATCAATCTCTTTTCCTGGTCGGAGAAATTGGGG
genomic: GAAGTGGTTTCGTGATCTGCTGAAACTGCTCTGCCCCGGCGACCTGGCCGgtatgttgat ... tattgcacagGTTGCACAGGCATGATGAATCAATCTCTTTTCCTGGTCGGAGAAATTGGGG