1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaaagcagagtgtgactcactcttgttcgttttatttttctttctgtccgcactgcactatactactactagtgatatatatctcgagatgatacggattatatggtcaactgtcaagcccaaggatgttaattatatgtctatatgtacgtgtgctttatgtgttgtagGATGCCGGTGACTTGTTCACGAGGGAGGGCATTTCCAAGGTCCCCTTCCCTAACAGCTGGAGAGGGCGGAATGGTCTCTACACCGTCGGATTCACTCAGC
species | Oryza sativa |
transcript | LOC_Os01g45760.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAATAATCCTCGCCACAGGCTACAGGAGCAACGTGCCATCTTGGCTCAAG GATGCCGGTGACTTGTTCACGAGGGAGGGCATTTCCAAGGTCCCCTTCCCTEST: gi|88227185|gb|CI228298.1|CI228298
genomic: CAATAATCCTCGCCACAGGCTACAGGAGCAACGTGCCATCTTGGCTCAAGgtaaagcaga ... tgtgttgtagGATGCCGGTGACTTGTTCACGAGGGAGGGCATTTCCAAGGTCCCCTTCCCT
EST: CAATAATCCTCGCCACAGGCTACAGGAGCAACGTGCCATCTTGGCTCAAG GATGCCGGTGACTTGTTCACGAGGGAGGGCATTTCCAAGGTCCCCTTCCCTEST: gi|88221912|gb|CI221868.1|CI221868
genomic: CAATAATCCTCGCCACAGGCTACAGGAGCAACGTGCCATCTTGGCTCAAGgtaaagcaga ... tgtgttgtagGATGCCGGTGACTTGTTCACGAGGGAGGGCATTTCCAAGGTCCCCTTCCCT
EST: CAATAATCCTCGCCACAGGCTACAGGAGCAACGTGCCATCTTGGCTCAAG GATGCCGGTGACTTGTTCACGAGGGAGGGCATTTCCAAGGTCCCCTTCCCTEST: gi|87025618|gb|CI250112.1|CI250112
genomic: CAATAATCCTCGCCACAGGCTACAGGAGCAACGTGCCATCTTGGCTCAAGgtaaagcaga ... tgtgttgtagGATGCCGGTGACTTGTTCACGAGGGAGGGCATTTCCAAGGTCCCCTTCCCT
EST: CAATAATCCTCGCCACAGGCTACAGGAGCAACGTGCCATCTTGGCTCAAG GATGCCGGTGACTTGTTCACGAGGGAGGGCATTTCCAAGGTCCCCTTCCCT
genomic: CAATAATCCTCGCCACAGGCTACAGGAGCAACGTGCCATCTTGGCTCAAGgtaaagcaga ... tgtgttgtagGATGCCGGTGACTTGTTCACGAGGGAGGGCATTTCCAAGGTCCCCTTCCCT
aagcccaaggatgttaattatatgtctatatgtacgtgtgctttatgtgttgtagGATGCCGGTGACTTGTTCACGAGGGAGGGCATTTCCAAGGTCCCCTTCCCTAACAGCTGGAGAGGGCGGAATGGTCTCTACACCGTCGGATTCACTCAGC
tgttaat putative branch site (score: 3)
atgttaattatatgtc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagcagagtgtgactcactcttgttcgttttatttttctttctgtccgcactgcactatactactactagtgatatatatctcgagatgatacggattatatggtcaactgtcaagcccaaggatgttaattatatgtctatatgtacgtgtgctttatgtgttgtagGATGCCGGTGACTTGTTCACGAGGGAGGGCATTTCCAAGGTCCCCTTCCCTAACAGCTGGAGAGGGCGGAATGGTCTCTACACCGTCGGATTCACTCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG