1 5' 3' | 2 5' 3' | 3 5' 3' |
...tggaaaatggttctcatatggagattcatttattttatccctgtgggttttctcctgtgctttgattgatgaggcgctgatgggaatcatgcatcactagGTAGTGGGAGCAGTGAAGGAGATGACGAGGCAAGGGGTCAGGTTCACGGATGGCAAGGAGGAGCAATTCGACACAATAATCCTCGCCACAGGCTACAGGA
species | Oryza sativa |
transcript | LOC_Os01g45760.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGTACTGGACCGTTGGGACGNTAGACCACATCAAATCCGGCAAAATTAAG GTAGTGGGAGCAGTGANGGAGATGNCGAGGCAAGGGGTCAGGTTCACGGATEST: gi|88227185|gb|CI228298.1|CI228298
genomic: CGTACTGGA-CGTTGGGACGCTAGACCACATCAAATCCGGCAAAATTAAGgttagtgcca ... gcatcactagGTAGTGGGAGCAGTGAAGGAGATGACGAGGCAAGGGGTCAGGTTCACGGAT
EST: CCGTACTGGACGTTGGGACGCTAGACCACATCAAATCCGGCAAAATTAAG GTAGTGGGAGCAGTGAAGGAGATGACGAGGCAAGGGGTCAGGTTCACGGATEST: gi|88221912|gb|CI221868.1|CI221868
genomic: CCGTACTGGACGTTGGGACGCTAGACCACATCAAATCCGGCAAAATTAAGgttagtgcca ... gcatcactagGTAGTGGGAGCAGTGAAGGAGATGACGAGGCAAGGGGTCAGGTTCACGGAT
EST: CTGGACGTTGGGACGCTAGACCACATCAAATCCGGCAAAATTAAG GTAGTGGGAGCAGTGAAGGAGATGACGAGGCAAGGGGTCAGGTTCACGGATEST: gi|87025618|gb|CI250112.1|CI250112
genomic: CTGGACGTTGGGACGCTAGACCACATCAAATCCGGCAAAATTAAGgttagtgcca ... gcatcactagGTAGTGGGAGCAGTGAAGGAGATGACGAGGCAAGGGGTCAGGTTCACGGAT
EST: CCGTACTGGACGTTGGGACGCTAGACCACATCATATCCGGCTAAATTAAG GTAGTGGGAGCAGTGAAGGAGATGACGAGGCAAGGGGTCAGTTTCACGGAT
genomic: CCGTACTGGACGTTGGGACGCTAGACCACATCAAATCCGGCAAAATTAAGgttagtgcca ... gcatcactagGTAGTGGGAGCAGTGAAGGAGATGACGAGGCAAGGGGTCAGGTTCACGGAT
ggttttctcctgtgctttgattgatgaggcgctgatgggaatcatgcatcactagGTAGTGGGAGCAGTGAAGGAGATGACGAGGCAAGGGGTCAGGTTCACGGATGGCAAGGAGGAGCAATTCGACACAATAATCCTCGCCACAGGCTACAGGA
cgctgat putative branch site (score: 4)
tttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggaaaatggttctcatatggagattcatttattttatccctgtgggttttctcctgtgctttgattgatgaggcgctgatgggaatcatgcatcactagGTAGTGGGAGCAGTGAAGGAGATGACGAGGCAAGGGGTCAGGTTCACGGATGGCAAGGAGGAGCAATTCGACACAATAATCCTCGCCACAGGCTACAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - -tggttct
- - - - - - - - - - - - - - - - - - - -cctgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgatg