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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgctccgtccatttcctgctcaaaatttgttcttctttgtctactagtgagccaacccagccagctggagttttacggttactcctccatggcc...

Basic information

species Oryza sativa
transcript LOC_Os01g45274.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g45274.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G348512_T06 (Zea mays), 5'ss of exon 3
CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacg--ctgctc-cgtccatttcctgctcaaaatttgttcttctttgtctactagtgagccaacccagccagctggagttttacggttactcctccatggcc
||||||||||||||| |||||||| ||||||||||||||||| ||||||||| |  || ||  | |  | | || |   |  ||  || || | || ||| |||||  || | | |        |  |      | ||  |  |   |    
CAAGAAGCCGGAGCTGTTCGAGCCTCTCAAGGCCGGCCAGGCCCCCAAGgtatgtgctactagcctatactaccagtctaccatgcgtgctgccttctcttctagtc-gctagctcccttgtacgccgccaagtgttttttttttttttt--

upper sequence: LOC_Os01g45274.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G121878_T06 (Zea mays), 5'ss of exon 4
CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgctccgtccatttcctgctcaaaatttgttcttctttgtctactagtgagccaacccagccag--ctggagttttacggttactcctccatggcc--
||||||||||||||| |||||||| |||||| ||||||||   |||| ||||   ||| | |   || |  |  |  | || | || || | |||||| ||| ||  |   ||| |  |  |   || || |    ||||  |   | |    
CAAGAAGCCGGAGCTGTTCGAGCCTCTCAAGTCCGGCCAGAGCCCCAGGgta---tgcgctgctaatgtttttttatatatattttgttgtgtgtcta-tagcgactccggccaactgggccaaaagattgagtagtactagttgctcgttcc

upper sequence: LOC_Os01g45274.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G121878_T01 (Zea mays), 5'ss of exon 10
CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgctccgtccatttcc---tgctcaaaatttgttcttctttgtctacta-gtgagccaacccagccagctggagttttacggttactcctccatggcc
||||||||||||||| |||| ||| |||||| |||||||||| ||||||||| ||      | | | |  |   | ||| |   || |||||||    | | |   || |||   |  ||  |||      | ||   |   |  ||||    
CAAGAAGCCGGAGCTTTTCGGGCCTCTCAAGTCCGGCCAGGCCCCCAAGgtatgcgctattgcctactagcctatactccattcttattcttctgaaccaaatgcatgcgccccgcgcgcgtgctaattgctaacccatgtgctgccat----

upper sequence: LOC_Os01g45274.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G094165_T07 (Zea mays), 5'ss of exon 3
CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgctccgtccatttcctgctcaaaatttgttcttctttgtctactagtgagccaacccagccagctggagttttacggttactcctccatggcc---
||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||   ||      | | |  || |   |  | |   ||| |    ||  |     ||   | ||   ||    | || | |     |    | | ||   
CAAGAAGCCGGAGCTGTTCGAGCCTCTCAAGGCCGGTCAGGCCCCCAAGgtacgtgactag---tactactcgccctgtagctctctctctatcgtcaccggcccagcattgccgcgttctcccatctttctgaactgcaaggacgaccctg

upper sequence: LOC_Os01g45274.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G348512_T01 (Zea mays), 5'ss of exon 3
CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgctccgtccatttcctgctcaaaatttgttcttctttgtctactagtgagccaac-ccagccagctg--gagttttacggttactcctccatggcc--
||||||||||||||| |||||||| ||||||||   |||| | ||||||||||| ||    ||||  |     |   | ||||  || |||  |   |       || |   || |  |      |||| || ||   |    | |   |||  
CAAGAAGCCGGAGCTGTTCGAGCCACTCAAGGCGCACCAGTCGCCCAAGgtacggtgt---gtcccctgggatcgtcagattt--tcctctgagagaaacgaaatgctatttcctgttattctacgagtattgcgtccagattttccaagccgt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38471649|gb|CF955780.1|CF955780
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|38471231|gb|CF955362.1|CF955362
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGG-CGGGCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|29686022|gb|CB682297.1|CB682297
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|38476030|gb|CF960163.1|CF960163
EST:     GAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACGCTCGCGTGTGCCCGTCGGTGACCATG
genomic: GAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|29615754|gb|CB620766.1|CB620766
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|38481454|gb|CF965543.1|CF965543
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|38475997|gb|CF960130.1|CF960130
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|38477597|gb|CF961730.1|CF961730
EST:     ACAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACAGTGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCAT
genomic: ACAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACA-TGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCAT
EST: gi|38479707|gb|CF963796.1|CF963796
EST:     CAAGAAG-CGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGAGTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|38475423|gb|CF959556.1|CF959556
EST:     GCTCTTCGAGCCG-TCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCGGGCGGTGACCATG
genomic: GCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|38483318|gb|CF967120.1|CF967120
EST:     GCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: GCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|58613056|gb|CK040768.1|CK040768
EST:     GCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: GCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|33684627|gb|CF312866.1|CF312866
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|36355243|gb|CF589207.1|CF589207
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|38475308|gb|CF959441.1|CF959441
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|38468721|gb|CF952852.1|CF952852
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTACTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|33822852|gb|CF337231.1|CF337231
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCGAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|38480149|gb|CF964238.1|CF964238
EST:     ACAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTGTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: ACAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|11442940|gb|BF430837.1|BF430837
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|29684733|gb|CB681008.1|CB681008
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|33692811|gb|CF321050.1|CF321050
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|33659185|gb|CF281798.1|CF281798
EST:     CAAGAAGCCGGAGCTCTTCTA-CCTCNT-AAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGC-TCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|29657151|gb|CB653426.1|CB653426
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|58594834|gb|CF993142.1|CF993142
EST:     ACAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGGCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: ACAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|29682804|gb|CB679079.1|CB679079
EST:     ACAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: ACAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|11442622|gb|BF430525.1|BF430525
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|33680416|gb|CF308655.1|CF308655
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|38475550|gb|CF959683.1|CF959683
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAGGGGCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|55411204|gb|CV723580.1|CV723580
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|4715140|gb|AU056257.1|AU056257
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|29684734|gb|CB681009.1|CB681009
EST:     AGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: AGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|33689373|gb|CF317612.1|CF317612
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|29664042|gb|CB660317.1|CB660317
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|58594391|gb|CF992699.1|CF992699
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGGCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|38473166|gb|CF957298.1|CF957298
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|58585665|gb|CF983973.1|CF983973
EST:     GAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|428393|gb|D24541.1|D24541
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|33662734|gb|CF293701.1|CF293701
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|38482639|gb|CF966593.1|CF966593
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGGCGGCCAGGCACCCAAG                         TACATGGTGTTCTACGTGCGCCGACTCTCGTCGTGTGCCCAGTCGGTAGAC
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCT-CGTGCGCCGACTCTCG-CGTGTGCCC-GTCGGT-GAC
EST: gi|38476451|gb|CF960584.1|CF960584
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|11442915|gb|BF430814.1|BF430814
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
EST: gi|38480358|gb|CF964447.1|CF964447
EST:     CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG                         TACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG
genomic: CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgct ... acaaatgcagTACATGGTGTTCTCGTGCGCCGACTCTCGCGTGTGCCCGTCGGTGACCATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGgtacgctgctccgtccatttcctgctcaaaatttgttcttctttgtctactagtgagccaacccagccagctggagttttacggttactcctccatggcc

 AAGAAG
- AGAAGC
- - - -  GGAGCT