1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATGGACGCCGCCGTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGAgtaagccccccttgcctatagatggttaatttgagaagaatttgggtagccgcgcgcgcggcgtgagatgaaactgacatgatcaccttgctgtttgtctttttgtctcctccgcag
species | Oryza sativa |
transcript | LOC_Os01g45274.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGEST: gi|38471231|gb|CF955362.1|CF955362
genomic: AAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: TCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGG-CGGGCAGGCACCCAAGEST: gi|29686022|gb|CB682297.1|CB682297
genomic: TCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGEST: gi|29615754|gb|CB620766.1|CB620766
genomic: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: TCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGEST: gi|38481454|gb|CF965543.1|CF965543
genomic: TCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGEST: gi|38475997|gb|CF960130.1|CF960130
genomic: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGEST: gi|33684627|gb|CF312866.1|CF312866
genomic: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGEST: gi|36355243|gb|CF589207.1|CF589207
genomic: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: TCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGEST: gi|38475308|gb|CF959441.1|CF959441
genomic: TCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGEST: gi|38468721|gb|CF952852.1|CF952852
genomic: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGEST: gi|33822852|gb|CF337231.1|CF337231
genomic: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCGAGEST: gi|11442940|gb|BF430837.1|BF430837
genomic: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: GCCAAGTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGEST: gi|29684733|gb|CB681008.1|CB681008
genomic: GCCAAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: GTTCAAGACCGAGATTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGEST: gi|33692811|gb|CF321050.1|CF321050
genomic: GTTCAAGACCGAG-TTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGEST: gi|33659185|gb|CF281798.1|CF281798
genomic: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: GTCGACCGCCTCAAGGATGGGTTCGCCTATTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCTA-CCTCNT-AAGGCCGGCCAGGCACCCAAGEST: gi|29657151|gb|CB653426.1|CB653426
genomic: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGC-TCAAGGCCGGCCAGGCACCCAAG
EST: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGEST: gi|11442622|gb|BF430525.1|BF430525
genomic: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGEST: gi|33680416|gb|CF308655.1|CF308655
genomic: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGEST: gi|38475550|gb|CF959683.1|CF959683
genomic: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: GCCAAGTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAGGGGCGGCCAGGCACCCAAGEST: gi|55411204|gb|CV723580.1|CV723580
genomic: GCCAAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGEST: gi|4715140|gb|AU056257.1|AU056257
genomic: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: GATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGEST: gi|33689373|gb|CF317612.1|CF317612
genomic: GATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGEST: gi|29664042|gb|CB660317.1|CB660317
genomic: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: TCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGEST: gi|58594391|gb|CF992699.1|CF992699
genomic: TCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGGCGGCCAGGCACCCAAGEST: gi|38473166|gb|CF957298.1|CF957298
genomic: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: GTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGEST: gi|58585665|gb|CF983973.1|CF983973
genomic: GTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGA GAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGEST: gi|428393|gb|D24541.1|D24541
genomic: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGEST: gi|33662734|gb|CF293701.1|CF293701
genomic: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGEST: gi|38482639|gb|CF966593.1|CF966593
genomic: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: GCCAAGTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGGCGGCCAGGCACCCAAGEST: gi|38476451|gb|CF960584.1|CF960584
genomic: GCCAAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: GTCGACCGCCTCAAGGATGGGTTCGCCGAGTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAGEST: gi|11442915|gb|BF430814.1|BF430814
genomic: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
EST: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGA CAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
genomic: GTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGAgtaagccccc ... tcctccgcagCAAGAAGCCGGAGCTCTTCGAGCCGCTCAAGGCCGGCCAGGCACCCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGACGCCGCCGTCGACCGCCTCAAGGATGGGTTCGCCAAGTTCAAGACCGAGTTCTATGAgtaagccccccttgcctatagatggttaatttgagaagaatttgggtagccgcgcgcgcggcgtgagatgaaactgacatgatcaccttgctgtttgtctttttgtctcctccgcag
- - - - - - - - - - - - AGGATG