Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCGACTCTCGCGTGTGCCCGTCGGTGACCATGGGCCTGGAGCCCGGCGAGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaacttcatcgtacgcgttttcgtcgccggccggtcgattggtaagctagctattccggtcggtcgccgcggtttgcattgattttgacccccctcgtgtgtgtgcgtcaactgcag

Basic information

species Oryza sativa
transcript LOC_Os01g45274.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g45274.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G094165_T06 (Zea mays), 5'ss of exon 4
CGCCGACTCTCGCGTGTGCCCGTCGGTGACCATGGGCCTGGAGCCCGGCGAGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaacttcatcgtacgcgtttt-cgt-cgccggccggtcgattggtaagcta-gctattccggtcggtcgcc-gcggtt--tgcattgattttgacccccctcgtgtgtgtgcgtcaactgcag----
| ||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||  ||||||||| || |||  |||||||||   |     ||  | |||  | |   ||||  ||||  |     |   | | | | |  |      || |  || | |  ||  |||  |||  |    ||          |   || ||||     
CTCCGACTCCCGCGTGTGCCCGTCGGTGACCCTGGGCCTGCAGCCCGGCGAGGCCTTCACCGTGCGCAACATCGCCGCCATGGTCCCGGCCTACGACAAGgtaacgcgcgcgcgcgcgctcgtcgtacacacgccacccggcggcgcaatggacgacgttctcacaacaactcactagcagctactgtgttgccttt--cgttacttaccatcaatcaataattgcatgcag

upper sequence: LOC_Os01g45274.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G094165_T07 (Zea mays), 5'ss of exon 4
CGCCGACTCTCGCGTGTGCCCGTCGGTGACCATGGGCCTGGAGCCCGGCGAGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaacttcatcgtacgcgtttt-cgt-cgccggccggtcgattggtaagcta-gctattccggtcggtcgccgcggtttgcattgattttgacccccctcgtgtgtgtgcgtcaactgcag
| ||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||  ||||||||| || |||  |||||||||   |     ||  | |||  | |   ||||  ||||  |     |   | | | | |  |      || |        |||   | | ||   ||  ||||                   
CTCCGACTCCCGCGTGTGCCCGTCGGTGACCCTGGGCCTGCAGCCCGGCGAGGCCTTCACCGTGCGCAACATCGCCGCCATGGTCCCGGCCTACGACAAGgtaacgcgcgcgcgcgcgctcgtcgtacacacgccacccggcggcgcaatggacgacgttctcacaacaactcacta------gcagctactgtgttgcctttcgt-------------------

upper sequence: LOC_Os01g45274.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G348512_T04 (Zea mays), 5'ss of exon 4
CGCCGACTCTCGCGTGTGCCCGTCGGTGACCATGGGCCTGGAGCCCGGCGAGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaacttcatcgtacgcgttttcgtcgccggccggtcga--ttggtaagctagctattccggtcggtcgccgcggtttgcattgattttgacccccctcgtgtgtgtgcgtcaactgcag
| ||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||  |||||||||||| |||  ||||||| | |  ||  |  ||    ||   | | | |||  |  ||  ||  | |  |  |                                                                  
CTCCGACTCCCGCGTGTGCCCGTCGGTGACCCTGGGCCTGCAGCCCGGCGAGGCCTTCACCGTCCGCAACATCGCCGCCATGGTCCCAGCCTACGACAAGgtatctagtttttttttattttttcctggctcgggcgcgcggacattaattaattgacag----------------------------------------------------------------

upper sequence: LOC_Os01g45274.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G121878_T06 (Zea mays), 5'ss of exon 5
CGCCGACTCTCGCGTGTGCCCGTCGGTGACCATGGGCCTGGAGCCCGGCGAGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaacttcatcgtacgcgttttcgtcg-ccggccggtcgattggtaa-gctagctattccggtcggtcgc-cgcggtttgcattgattttgacccccctcgtgtgtgtgcgtcaactgcag
| ||||||| ||||||||||||||||||||  |||||||| ||||||||||||| |||||||||||||||||||||  |||||||||| | |||  |||||||   |       |||||| |    |  ||  || |   |  |  |||      ||| |  |   |    | | | ||||   | |   ||||| ||   ||   |                  
CTCCGACTCCCGCGTGTGCCCGTCGGTGACACTGGGCCTGCAGCCCGGCGAGGCATTCACCGTCCGCAACATCGCCTCCATGGTCCCACCCTACGACAAGgtacgta-------cgtacgagcaaacaccgatcgacgcatgcaacggtggtatcagccacactaatattactcacacggtcgtcttccgttttggccaaactgcag------------------

upper sequence: LOC_Os01g45274.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G348512_T01 (Zea mays), 5'ss of exon 4
CGCCGACTCTCGCGTGTGCCCGTCGGTGACCATGGGCCTGGAGCCCGGCGAGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaacttcatcgtacg-cgttttcgtcgccggccggtcgattggtaagctagctattccggtcggtcgccgcggtttgcattgattttgacccccctcgtgtgtgtgcgtcaactgcag
| ||||||| ||||||||||||||||||||| |||||||| | ||||||||||||||  |||||||||||||||||| |||||| ||  | |||  |||||| | ||    |  || ||| ||  | | |||   |||  ||   ||||||   | || |    || |      |||  |  |    | | |   |   |   ||                  
CTCCGACTCCCGCGTGTGCCCGTCGGTGACCCTGGGCCTGCACCCCGGCGAGGCCTTTGCCGTCCGCAACATCGCCAGCATGGTGCCGCCCTACGACAAGgtgagcacacgcg-cgcacgacgcatgcatcgtacgcc--tcccctggtaa--caactgtgt--gtggcctctagcgactcacgcgtactattgtcgatcgactgcag---------------

upper sequence: LOC_Os01g45274.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G348512_T06 (Zea mays), 5'ss of exon 4
CGCCGACTCTCGCGTGTGCCCGTCGGTGACCATGGGCCTGGAGCCCGGCGAGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaacttcatcgtacgcgttttcgtcgccggccggtcga--ttggtaagctagctattccggtcggtcgccgcggtttgcattgattttgacccccctcgtgtgtgtgcgtcaactgcag
| ||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||  |||||||||||| |||  ||||||| | |  ||  |  ||    ||   | | | |||  |  ||  ||  | |  |  |  |||   |  ||    |  |  ||||                                       
CTCCGACTCCCGCGTGTGCCCGTCGGTGACCCTGGGCCTGCAGCCCGGCGAGGCCTTCACCGTCCGCAACATCGCCGCCATGGTCCCAGCCTACGACAAGgtatctagtttttttttattttttcctggctcgggcgcgcggacattaattaattgacagttcgttttcgt----gtcgactgcag--------------------------------------

upper sequence: LOC_Os01g45274.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G121878_T04 (Zea mays), 5'ss of exon 3
CGCCGACTCTCGCGTGTGCCCGTCGGTGACCATGGGCCTGGAGCCCGGCGAGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaacttcatcgtacgcgttttcgtcgccggccggtcgattggtaagctagctattccggtcggtcgccgcggtttgcattgattttgacccccctcgtgtgtgtgcgtcaactgcag
| ||||||| || |||||||| ||||||||| |||||||| |||||||||||||||||||||| |||||||| |||  |||||||||||  |||  |||||||   |    ||  | |||     | ||   |  |     | |    |      ||    ||| ||| ||| ||   | |  ||  | | |||  |                         
CTCCGACTCCCGTGTGTGCCCATCGGTGACCCTGGGCCTGCAGCCCGGCGAGGCCTTCACCGTTCGCAACATAGCCGCCATGGTCCCAGGCTACGACAAGgtatatatacacactg-acg----attgtgaacaacgcaatggtctcaatttctactcacacggccggccgcggcctctcgttttcgtgtcgactgcag-----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38471649|gb|CF955780.1|CF955780
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38471231|gb|CF955362.1|CF955362
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|29686022|gb|CB682297.1|CB682297
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|29615755|gb|CB620767.1|CB620767
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|58591077|gb|CF989385.1|CF989385
EST:     GCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: GCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38476030|gb|CF960163.1|CF960163
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|58590664|gb|CF988972.1|CF988972
EST:     CAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGGCATCGAGTACGCCGTCTG-GCCCTC
genomic: CAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|29615754|gb|CB620766.1|CB620766
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38481454|gb|CF965543.1|CF965543
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38475997|gb|CF960130.1|CF960130
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGA
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGA
EST: gi|11442961|gb|BF430857.1|BF430857
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38477597|gb|CF961730.1|CF961730
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|4715141|gb|AU056258.1|AU056258
EST:     GCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: GCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38481330|gb|CF965419.1|CF965419
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|33676856|gb|CF305095.1|CF305095
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38479707|gb|CF963796.1|CF963796
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38475423|gb|CF959556.1|CF959556
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38483318|gb|CF967120.1|CF967120
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|29682701|gb|CB678976.1|CB678976
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|58613056|gb|CK040768.1|CK040768
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTG
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCT-
EST: gi|33684627|gb|CF312866.1|CF312866
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|36355243|gb|CF589207.1|CF589207
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38475308|gb|CF959441.1|CF959441
EST:     AGGCCTTCACCGTCCGCAACATCGCCNACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38468721|gb|CF952852.1|CF952852
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|33822852|gb|CF337231.1|CF337231
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCNGGGTCGGCCATCGAGTACGCCGTCTGCGCCCT
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTC-GGGTCGGCCATCGAGTACGCCGTCTGCGCCCT
EST: gi|38480149|gb|CF964238.1|CF964238
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|33686819|gb|CF315058.1|CF315058
EST:     CATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: CATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|11442940|gb|BF430837.1|BF430837
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|29684733|gb|CB681008.1|CB681008
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38481171|gb|CF965260.1|CF965260
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCGCGGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|33692811|gb|CF321050.1|CF321050
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|33659185|gb|CF281798.1|CF281798
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|29657151|gb|CB653426.1|CB653426
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGGCGGGGCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38482391|gb|CF966431.1|CF966431
EST:     AGG-CTTCACCGTCCGC-ACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCGAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|58594834|gb|CF993142.1|CF993142
EST:     AGGGCTTCCCCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCCAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|33665509|gb|CF296476.1|CF296476
EST:     CAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: CAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|58611704|gb|CK039416.1|CK039416
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|29689634|gb|CB685909.1|CB685909
EST:     CGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: CGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|29682804|gb|CB679079.1|CB679079
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|29685979|gb|CB682254.1|CB682254
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|11442622|gb|BF430525.1|BF430525
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|33680416|gb|CF308655.1|CF308655
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38475550|gb|CF959683.1|CF959683
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|55411204|gb|CV723580.1|CV723580
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|4715140|gb|AU056257.1|AU056257
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|11442977|gb|BF430873.1|BF430873
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38475763|gb|CF959896.1|CF959896
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|29684734|gb|CB681009.1|CB681009
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|33689373|gb|CF317612.1|CF317612
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38476134|gb|CF960267.1|CF960267
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38481661|gb|CF965750.1|CF965750
EST:     ACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: ACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38481869|gb|CF965938.1|CF965938
EST:     AACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTGACGCCGTCTGCGCCCT
genomic: AACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGT-ACGCCGTCTGCGCCCT
EST: gi|29664042|gb|CB660317.1|CB660317
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|58594391|gb|CF992699.1|CF992699
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38473166|gb|CF957298.1|CF957298
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|58585665|gb|CF983973.1|CF983973
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|13904802|gb|BF889440.1|BF889440
EST:     ACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: ACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|33662734|gb|CF293701.1|CF293701
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38482639|gb|CF966593.1|CF966593
EST:     GGCCTTCACCCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: GGCCTTCA-CCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38476451|gb|CF960584.1|CF960584
EST:     AGGCCTTCACCGGGCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|8956162|gb|BE229966.1|BE229966
EST:     GCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGCTCGGCCATCGAGTACTCCGTCTGCGCCCTC
genomic: GCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|29686023|gb|CB682298.1|CB682298
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|11442915|gb|BF430814.1|BF430814
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38477036|gb|CF961169.1|CF961169
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38468697|gb|CF952828.1|CF952828
EST:     AGGCCTTCACCGTCCGCAACATCGCCAATATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
EST: gi|38480358|gb|CF964447.1|CF964447
EST:     AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAG                         ATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC
genomic: AGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 54 (downstream exon)
Score: 375

CGCCGACTCTCGCGTGTGCCCGTCGGTGACCATGGGCCTGGAGCCCGGCGAGGCCTTCACCGTCCGCAACATCGCCAACATGGTCCCAGCTTACTGCAAGgtaaccaact ... tcaactgcagATCAAGCACGCTGGCGTCGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTCAAG




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