1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatgattgaaaaaccaaacttgttgtatactgtaagtaataaaattcttgcttaacatatcttcatgtgcaaaagGATCGGAGGAACCGAAGGAGTCGCACAGGAAGCATGGATATCGAGTCGATTGCAGAGGGCTCAAATTCAACCGAATTTGCAAACAAGGTAGAAAGAACTG
species | Oryza sativa |
transcript | LOC_Os01g44110.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGGCCAAGTTGTTAGGATGCTTGAGTCTGAAGAAGTTCCATACCGGGAG GATCGGAGGAACCGAAGGAGTCGCACAGGAAGCATGGATATCGAGTCGATTEST: gi|86500480|gb|CI143113.1|CI143113
genomic: TGGGCCAAGTTGTTAGGATGCTTGAGTCTGAAGAAGTTCCATACCGGGAGgtaatgattg ... tgtgcaaaagGATCGGAGGAACCGAAGGAGTCGCACAGGAAGCATGGATATCGAGTCGATT
EST: TGGGCCAAGTTGTTAGGATGCTTGAGTCTGAAGAAGTTCCATACCGGGAG GATCGGAGGAACCGAAGGAGTCGCACAGGAAGCATGGATATCGAGTCGATTEST: gi|163925542|gb|EG713383.1|EG713383
genomic: TGGGCCAAGTTGTTAGGATGCTTGAGTCTGAAGAAGTTCCATACCGGGAGgtaatgattg ... tgtgcaaaagGATCGGAGGAACCGAAGGAGTCGCACAGGAAGCATGGATATCGAGTCGATT
EST: TGGGCCAAGTTGTTAGGATGCTTGAGTCTGAAGAAGTTCCATACCGGGAG GATCGGAGGAACCGAAGGAGTCGCACAGGAAGCATGGATATCGAGTCGATTEST: gi|89180515|gb|CI044794.1|CI044794
genomic: TGGGCCAAGTTGTTAGGATGCTTGAGTCTGAAGAAGTTCCATACCGGGAGgtaatgattg ... tgtgcaaaagGATCGGAGGAACCGAAGGAGTCGCACAGGAAGCATGGATATCGAGTCGATT
EST: TGGGCCAAGTTGTTAGGATGCTTGAGTCTGAAGAAGTTCCATACCGGGAG GATCGGAGGAACCGAAGGAGTCGCACAGGAAGCATGGATATCGAGTCGATT
genomic: TGGGCCAAGTTGTTAGGATGCTTGAGTCTGAAGAAGTTCCATACCGGGAGgtaatgattg ... tgtgcaaaagGATCGGAGGAACCGAAGGAGTCGCACAGGAAGCATGGATATCGAGTCGATT
tgttgtatactgtaagtaataaaattcttgcttaacatatcttcatgtgcaaaagGATCGGAGGAACCGAAGGAGTCGCACAGGAAGCATGGATATCGAGTCGATTGCAGAGGGCTCAAATTCAACCGAATTTGCAAACAAGGTAGAAAGAACTG
gcttaac putative branch site (score: 19)
tcttcat putative PPT
tatactgtaagtaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgattgaaaaaccaaacttgttgtatactgtaagtaataaaattcttgcttaacatatcttcatgtgcaaaagGATCGGAGGAACCGAAGGAGTCGCACAGGAAGCATGGATATCGAGTCGATTGCAGAGGGCTCAAATTCAACCGAATTTGCAAACAAGGTAGAAAGAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC