1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aagtgacattttttttctttataagctggacttgcttgattgtttcaatgcaagaacaactaagtcatatgcatttaagagcctcattctcattctgcagGGAGAAGAGTGCATCCACACTTGCTGAGGCCAACTAGGGGATCCCCATTGATGCAGTCCAACTGAAATTTCCCAATCTACACAAGAATTGAGCACGGGGC
species | Oryza sativa |
transcript | LOC_Os01g44110.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTCTTTGCTTGAGGGATGAGCAGATGGAGGTCCTATTGCCAAAAGTG GGAGAAGAGTGCATCCACACTTGCTGAGGCCAACTAGGGGATCCCCATTGAEST: gi|87008816|gb|CI302971.1|CI302971
genomic: GTTCTTTGCTTGAGGGATGAGCAGATGGAGGTCCTATTGCCAAAAGTGgtaagcttta ... cattctgcagGGAGAAGAGTGCATCCACACTTGCTGAGGCCAACTAGGGGATCCCCATTGA
EST: GTTCTTTGCTTGAGGGATGAGCAGATGGAGGTCCTATTGCCAAAAGTG GGAGAAGAGTGCATCCACACTTGCTGAGGCCAACTAGGGGATCCCCATTGAEST: gi|88428499|gb|CI564967.1|CI564967
genomic: GTTCTTTGCTTGAGGGATGAGCAGATGGAGGTCCTATTGCCAAAAGTGgtaagcttta ... cattctgcagGGAGAAGAGTGCATCCACACTTGCTGAGGCCAACTAGGGGATCCCCATTGA
EST: GTTCTTTGCTTGAGGGATGAGGAGATGGAGGTCCTATTGCCAAAAGTG GGAGAAGAGTGCATCCACACTTGCTGAGGCCAACTAGGGGATCCCCATTGAEST: gi|58669378|gb|CK058064.1|CK058064
genomic: GTTCTTTGCTTGAGGGATGAGCAGATGGAGGTCCTATTGCCAAAAGTGgtaagcttta ... cattctgcagGGAGAAGAGTGCATCCACACTTGCTGAGGCCAACTAGGGGATCCCCATTGA
EST: GTTCTTTGCTTGAGGGATGAGCAGATGGAGGTCCTATTGCCAAAAGTG GGAGAAGAGTGCATCCACACTTGCTGAGGCCAACTAGGGGATCCCCATTGAEST: gi|13904811|gb|BF889449.1|BF889449
genomic: GTTCTTTGCTTGAGGGATGAGCAGATGGAGGTCCTATTGCCAAAAGTGgtaagcttta ... cattctgcagGGAGAAGAGTGCATCCACACTTGCTGAGGCCAACTAGGGGATCCCCATTGA
EST: GTTCTTTGCTTGAGGGATGAGCAGATGGAGGTCCTATTGCCAAAAGTG GGAGAAGAGTGCATCCACACTTGCTGAGGCCAACTAGGGGATCCCCATTGAEST: gi|88317200|gb|CI626843.1|CI626843
genomic: GTTCTTTGCTTGAGGGATGAGCAGATGGAGGTCCTATTGCCAAAAGTGgtaagcttta ... cattctgcagGGAGAAGAGTGCATCCACACTTGCTGAGGCCAACTAGGGGATCCCCATTGA
EST: GTTCTTTGCTTGAGGGATGAGCAGATGGAGGTCCTATTGCCAAAAGTG GGAGAAGAGTGCATCCACACTTGCTGAGGCCAACTAGGGGATCCCCATTGAEST: gi|58684954|gb|CK073641.1|CK073641
genomic: GTTCTTTGCTTGAGGGATGAGCAGATGGAGGTCCTATTGCCAAAAGTGgtaagcttta ... cattctgcagGGAGAAGAGTGCATCCACACTTGCTGAGGCCAACTAGGGGATCCCCATTGA
EST: GTTCTTTGCTTGAGGGATGAGCAGATGGAGGTCCTATTGCCAAAAGTG GGAGAAGAGTGCATCCACACTTGCTGAGGCCAACTAGGGGATCCCCATTGA
genomic: GTTCTTTGCTTGAGGGATGAGCAGATGGAGGTCCTATTGCCAAAAGTGgtaagcttta ... cattctgcagGGAGAAGAGTGCATCCACACTTGCTGAGGCCAACTAGGGGATCCCCATTGA
caatgcaagaacaactaagtcatatgcatttaagagcctcattctcattctgcagGGAGAAGAGTGCATCCACACTTGCTGAGGCCAACTAGGGGATCCCCATTGATGCAGTCCAACTGAAATTTCCCAATCTACACAAGAATTGAGCACGGGGC
cctcattctcattct CT-rich tract
atttaaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtgacattttttttctttataagctggacttgcttgattgtttcaatgcaagaacaactaagtcatatgcatttaagagcctcattctcattctgcagGGAGAAGAGTGCATCCACACTTGCTGAGGCCAACTAGGGGATCCCCATTGATGCAGTCCAACTGAAATTTCCCAATCTACACAAGAATTGAGCACGGGGC
- - - - - - - - - - - - gctggac
- - - - - - - - - - - - - - - -ttgcttg
- - - - - - - - - - - - - - - - - - - - - - -caatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - caactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgcatt