1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaagttgcattatccataagtcccctctgtgctctacattaaattagcaatgatgcacggagtagactgcttattaaccattcctttttgctccacctcagGCTGGCTATTTGTGGTACGAGTATATTTACAAACTAGACAAAATTACATACAACAAGTACCATCCGTACACATCATGGATTCCTATCAC
species | Oryza sativa |
transcript | LOC_Os01g44040.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTAAGGTTAGGTTGTCAATTAAGGGAACCATCATTAGTATTTCCTTGGTG GCTGGCTATTTGTGGTACGAGTATATTTACAAACTAGACAAAATTACATACEST: gi|29659100|gb|CB655375.1|CB655375
genomic: CTAAGGTTAGGTTGTCAATTAAGGGAACCATCATTAGTATTTCCTTGGTGgtaagttgca ... tccacctcagGCTGGCTATTTGTGGTACGAGTATATTTACAAACTAGACAAAATTACATAC
EST: CTAAGGTTAGGTTGTCAATTAAGGGAACCATCATTAGTATTTCCTTGGTG GCTGGCTATTTGTGGTACGAGTATATTTACAAACTAGACAAAATTACATACEST: gi|86502826|gb|CI145459.1|CI145459
genomic: CTAAGGTTAGGTTGTCAATTAAGGGAACCATCATTAGTATTTCCTTGGTGgtaagttgca ... tccacctcagGCTGGCTATTTGTGGTACGAGTATATTTACAAACTAGACAAAATTACATAC
EST: CTAAGGTTAGGTTGTCAATTAAGGGAACCATCATTAGTATTTCCTTGGTG GCTGGCTATTTGTGGTACGAGTATATTTACAAACTAGACAAAATTACATAC
genomic: CTAAGGTTAGGTTGTCAATTAAGGGAACCATCATTAGTATTTCCTTGGTGgtaagttgca ... tccacctcagGCTGGCTATTTGTGGTACGAGTATATTTACAAACTAGACAAAATTACATAC
gcaatgatgcacggagtagactgcttattaaccattcctttttgctccacctcagGCTGGCTATTTGTGGTACGAGTATATTTACAAACTAGACAAAATTACATACAACAAGTACCATCCGTACACATCATGGATTCCTATCAC
tattaac putative branch site (score: 1)
ccattcctttttgctc CT-rich tract
ttattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgcattatccataagtcccctctgtgctctacattaaattagcaatgatgcacggagtagactgcttattaaccattcctttttgctccacctcagGCTGGCTATTTGTGGTACGAGTATATTTACAAACTAGACAAAATTACATACAACAAGTACCATCCGTACACATCATGGATTCCTATCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA