1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atgattgcaagaagagtctacgtatacatttttttagactaagctaaatttatacagtagcaattgagagtttactcttgcatgattgaaaattttacagGTTCTTACCAACTAAAAACAACAGAAGGTTGAGAGAAATTGAAAGAGAGGTCAGCAAACTTCTACGAGGAATAATTGGAAAGAGAGAGCGGGCTATTAAA
species | Oryza sativa |
transcript | LOC_Os01g43710.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCCGAACGCATAATACAAGCCTTTCGGACAATTTTTATACCAGGATATTG GTTCTTACCAACTAAAAACAACAGAAGGTTGAGAGAAATTGAAAGAGAGGTEST: gi|29620835|gb|CB625846.1|CB625846
genomic: GCCGAACGCATAATACAAGCCTTTCGGACAATTTTTATACCAGGATATTGgtttgttctt ... aattttacagGTTCTTACCAACTAAAAACAACAGAAGGTTGAGAGAAATTGAAAGAGAGGT
EST: GCCGAACGCATAATACAAGCCTTTCGGACAATTTTTATACCAGGATATTG GTTCTTACCAACTAAEST: gi|33678476|gb|CF306715.1|CF306715
genomic: GCCGAACGCATAATACAAGCCTTTCGGACAATTTTTATACCAGGATATTGgtttgttctt ... aattttacagGTTCTTACCAACTAA
EST: GCCGAACGCATAATACAAGCCTTTCGGACAATTTTTATACCACGATATTG GTTCTTACCAACTAAAAACAACAGEST: gi|29620809|gb|CB625820.1|CB625820
genomic: GCCGAACGCATAATACAAGCCTTTCGGACAATTTTTATACCAGGATATTGgtttgttctt ... aattttacagGTTCTTACCAACTAAAAACAACAG
EST: GCCGAACGCATAATACAAGCCTTTCGGACAATTTTTATACCAGGATATTG GTTCTTACCAACTAAAEST: gi|2311984|gb|C28139.1|C28139
genomic: GCCGAACGCATAATACAAGCCTTTCGGACAATTTTTATACCAGGATATTGgtttgttctt ... aattttacagGTTCTTACCAACTAAA
EST: GCCGAACGCATAATACAAGCCTTTCGGACAATTTTTATACCAGGATATTG GTTCTTACCAACTAAAAACAACAGAAGGTTGAGAGAAATTGAAAGAGAGGTEST: gi|58688272|gb|CK076959.1|CK076959
genomic: GCCGAACGCATAATACAAGCCTTTCGGACAATTTTTATACCAGGATATTGgtttgttctt ... aattttacagGTTCTTACCAACTAAAAACAACAGAAGGTTGAGAGAAATTGAAAGAGAGGT
EST: GCCGAACGCATAATACAAGCCTTTCGGACAATTTTTATACCAGGATATTG GTTCTTACCAACTAAAAACAACAGAAGGTTGAGAGAAATTGAAAGAGAGGTEST: gi|29620874|gb|CB625885.1|CB625885
genomic: GCCGAACGCATAATACAAGCCTTTCGGACAATTTTTATACCAGGATATTGgtttgttctt ... aattttacagGTTCTTACCAACTAAAAACAACAGAAGGTTGAGAGAAATTGAAAGAGAGGT
EST: GCCGAACGCATAATACAAGCCTTTCGGACAATTTTTATACCAGGATATTG GGTCTTACCAACTAAA
genomic: GCCGAACGCATAATACAAGCCTTTCGGACAATTTTTATACCAGGATATTGgtttgttctt ... aattttacagGTTCTTACCAACTAAA
aaatttatacagtagcaattgagagtttactcttgcatgattgaaaattttacagGTTCTTACCAACTAAAAACAACAGAAGGTTGAGAGAAATTGAAAGAGAGGTCAGCAAACTTCTACGAGGAATAATTGGAAAGAGAGAGCGGGCTATTAAA
agctaaa putative branch site (score: 25)
atgattgaaaatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgattgcaagaagagtctacgtatacatttttttagactaagctaaatttatacagtagcaattgagagtttactcttgcatgattgaaaattttacagGTTCTTACCAACTAAAAACAACAGAAGGTTGAGAGAAATTGAAAGAGAGGTCAGCAAACTTCTACGAGGAATAATTGGAAAGAGAGAGCGGGCTATTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
-tgattgc
- - - - aagaagag
- - - - - - - - - - - - - - - - - - - - -agctaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - cagtagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgat