1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgaaattcattttatcacttttagattgcagcattccatatttcttattgggtaatgtaccaaagttggctaacaatgttgtctcgttcacagCGGATGCTGCCAGTTTTTTCTAACTGCTGCACGGAAATGGTTACAAGATGGGAGAATTCAATGTCTATTGAAGGAATGTCAGAGGTAGATGTTTGGCCTG
species | Oryza sativa |
transcript | LOC_Os01g43710.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAAGCACCGGAGAATTCTGAATCCTGCCTTTCACCACGAGAAAATAAAG CGGATGCTGCCAGTTTTTTCTAACTGCTGCACGGAAATGGTTACAAGATGGEST: gi|29620925|gb|CB625936.1|CB625936
genomic: CAAAGCACCGGAGAATTCTGAATCCTGCCTTTCACCACGAGAAAATAAAGgtgaaattca ... tcgttcacagCGGATGCTGCCAGTTTTTTCTAACTGCTGCACGGAAATGGTTACAAGATGG
EST: CAAAGCACCGGAGAATTCTGAATCCTGCCTTTCACCACGAGAAAATAAAG CGGATGCTGCCAGTTTTTTCTAACTGCTGCACGGAAATGGTTACAAGATGGEST: gi|29620835|gb|CB625846.1|CB625846
genomic: CAAAGCACCGGAGAATTCTGAATCCTGCCTTTCACCACGAGAAAATAAAGgtgaaattca ... tcgttcacagCGGATGCTGCCAGTTTTTTCTAACTGCTGCACGGAAATGGTTACAAGATGG
EST: CAAAGCACCGGAGAATTCTGAATCCTGCCTTTCACCACGAGAAAATAAAG CGGATGCTGCCAGTTTTTTCTAACTGCTGCACGGAAATGGTTACAAGATGGEST: gi|33678476|gb|CF306715.1|CF306715
genomic: CAAAGCACCGGAGAATTCTGAATCCTGCCTTTCACCACGAGAAAATAAAGgtgaaattca ... tcgttcacagCGGATGCTGCCAGTTTTTTCTAACTGCTGCACGGAAATGGTTACAAGATGG
EST: CAAAGCACCGGAGAATTCTGAATCCTGCCTTTCACCACGAGAAAATAAAG CGGATGCTGCCAGTTTTTTCTAACTGCTGCACGGAAATGGTTACAAGATGGEST: gi|29620809|gb|CB625820.1|CB625820
genomic: CAAAGCACCGGAGAATTCTGAATCCTGCCTTTCACCACGAGAAAATAAAGgtgaaattca ... tcgttcacagCGGATGCTGCCAGTTTTTTCTAACTGCTGCACGGAAATGGTTACAAGATGG
EST: CAAAGCACCGGAGAATTCTGAATCCTGCCTTTCACCACGAGAAAATAAAG CGGATGCTGCCAGTTTTTTCTAACTGCTGCACGGAAATGGTTACAAGATGGEST: gi|29620813|gb|CB625824.1|CB625824
genomic: CAAAGCACCGGAGAATTCTGAATCCTGCCTTTCACCACGAGAAAATAAAGgtgaaattca ... tcgttcacagCGGATGCTGCCAGTTTTTTCTAACTGCTGCACGGAAATGGTTACAAGATGG
EST: CAAAGCACCGGAGAATTCTGAATCCTGCCTTTCACCACGAGAAAATAAAG CGGATGCTGCCAGTTTTTTCTAACTGCTGCACGGAAATGGTTACAAGATGGEST: gi|426509|gb|D22332.1|D22332
genomic: CAAAGCACCGGAGAATTCTGAATCCTGCCTTTCACCACGAGAAAATAAAGgtgaaattca ... tcgttcacagCGGATGCTGCCAGTTTTTTCTAACTGCTGCACGGAAATGGTTACAAGATGG
EST: CAAAGCACCGGAGAATTCTGAATCCTGCCTTTCACCACGAGAAAATAAAG CGGATGCTGCCAGTTTTTTCTAACTGCTGCACGGAAATGGTTACAAGATGGEST: gi|58688272|gb|CK076959.1|CK076959
genomic: CAAAGCACCGGAGAATTCTGAATCCTGCCTTTCACCACGAGAAAATAAAGgtgaaattca ... tcgttcacagCGGATGCTGCCAGTTTTTTCTAACTGCTGCACGGAAATGGTTACAAGATGG
EST: CAAAGCACCGGAGAATTCTGAATCCTGCCTTTCACCACGAGAAAATAAAG CGGATGCTGCCAGTTTTTTCTAACTGCTGCACGGAAATGGTTACAAGATGGEST: gi|29620837|gb|CB625848.1|CB625848
genomic: CAAAGCACCGGAGAATTCTGAATCCTGCCTTTCACCACGAGAAAATAAAGgtgaaattca ... tcgttcacagCGGATGCTGCCAGTTTTTTCTAACTGCTGCACGGAAATGGTTACAAGATGG
EST: CAAAGCACCGGAGAATTCTGAATCCTGCCTTTCACCACGAGAAAATAAAG CGGATGCTGCCAGTTTTTTCTAACTGCTGCACGGAAATGGTTACAAGATGGEST: gi|29620874|gb|CB625885.1|CB625885
genomic: CAAAGCACCGGAGAATTCTGAATCCTGCCTTTCACCACGAGAAAATAAAGgtgaaattca ... tcgttcacagCGGATGCTGCCAGTTTTTTCTAACTGCTGCACGGAAATGGTTACAAGATGG
EST: CAAAGCACCGGAGAATTCTGAATCCTGCCTTTCACCACGAGAAAATAAAG CGGATGCTGCCAGTTTTTTCTAACTGCTGCACGGAAATGGTTACAAGATGGEST: gi|33799605|gb|CF325663.1|CF325663
genomic: CAAAGCACCGGAGAATTCTGAATCCTGCCTTTCACCACGAGAAAATAAAGgtgaaattca ... tcgttcacagCGGATGCTGCCAGTTTTTTCTAACTGCTGCACGGAAATGGTTACAAGATGG
EST: CAAAGCACCGGAGAATTCTGAATCCTGCCTTTCACCACGAGAAAATAAAG CGGATGCTGCCAGTTTTTTCTAACTGCTGCACGGAAATGGTTACAAGATGG
genomic: CAAAGCACCGGAGAATTCTGAATCCTGCCTTTCACCACGAGAAAATAAAGgtgaaattca ... tcgttcacagCGGATGCTGCCAGTTTTTTCTAACTGCTGCACGGAAATGGTTACAAGATGG
tatttcttattgggtaatgtaccaaagttggctaacaatgttgtctcgttcacagCGGATGCTGCCAGTTTTTTCTAACTGCTGCACGGAAATGGTTACAAGATGGGAGAATTCAATGTCTATTGAAGGAATGTCAGAGGTAGATGTTTGGCCTG
ggctaac putative branch site (score: 44)
tctcgttc putative PPT
taatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaattcattttatcacttttagattgcagcattccatatttcttattgggtaatgtaccaaagttggctaacaatgttgtctcgttcacagCGGATGCTGCCAGTTTTTTCTAACTGCTGCACGGAAATGGTTACAAGATGGGAGAATTCAATGTCTATTGAAGGAATGTCAGAGGTAGATGTTTGGCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA