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GAGCAGCTGCCCCCTCTGTTGCTTCTTTTGTTGAGGAAAAGGATGATGCTGCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAGgtaaccagttcatgaatcctttaacactgtgcttcttttcccaatacagttctttagtcaagtatcaagttattctgaattgaggggtccactttatatt...
species | Oryza sativa |
transcript | LOC_Os01g43540.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAG GCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAAEST: gi|29661448|gb|CB657723.1|CB657723
genomic: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAGgtaaccagtt ... ggtgttgcagGCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAA
EST: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAG GCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAAEST: gi|58662717|gb|CK051403.1|CK051403
genomic: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAGgtaaccagtt ... ggtgttgcagGCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAA
EST: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAG GCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAAEST: gi|58593415|gb|CF991723.1|CF991723
genomic: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAGgtaaccagtt ... ggtgttgcagGCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAA
EST: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAG GCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAAEST: gi|29660562|gb|CB656837.1|CB656837
genomic: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAGgtaaccagtt ... ggtgttgcagGCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAA
EST: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAG GCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAAEST: gi|29625917|gb|CB630928.1|CB630928
genomic: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAGgtaaccagtt ... ggtgttgcagGCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAA
EST: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAG GCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAAEST: gi|33797195|gb|CF324461.1|CF324461
genomic: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAGgtaaccagtt ... ggtgttgcagGCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAA
EST: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAG GCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAAEST: gi|27578357|gb|CB001052.1|CB001052
genomic: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAGgtaaccagtt ... ggtgttgcagGCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAA
EST: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAG GCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAAEST: gi|29660561|gb|CB656836.1|CB656836
genomic: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAGgtaaccagtt ... ggtgttgcagGCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAA
EST: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAG GCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAAEST: gi|163920381|gb|EG714468.1|EG714468
genomic: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAGgtaaccagtt ... ggtgttgcagGCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAA
EST: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAG GCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAAEST: gi|33686913|gb|CF315152.1|CF315152
genomic: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAGgtaaccagtt ... ggtgttgcagGCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAA
EST: GCGAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAG GCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAAEST: gi|58594119|gb|CF992427.1|CF992427
genomic: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAGgtaaccagtt ... ggtgttgcagGCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAA
EST: CAAACATGGATNATACACCACCAATGGTAGAAGTGAAGCGCGAAATACAG GCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAAEST: gi|218487981|gb|FG959844.1|FG959844
genomic: CAAACATGGATAATACACCACCAATGGTAGAAGTGAAGC-CAAAATACAGgtaaccagtt ... ggtgttgcagGCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAA
EST: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAG GCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAAEST: gi|29659289|gb|CB655564.1|CB655564
genomic: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAGgtaaccagtt ... ggtgttgcagGCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAA
EST: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAG GCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAAEST: gi|29669129|gb|CB665404.1|CB665404
genomic: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAGgtaaccagtt ... ggtgttgcagGCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAA
EST: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAG GCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAAEST: gi|29658976|gb|CB655251.1|CB655251
genomic: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAGgtaaccagtt ... ggtgttgcagGCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAA
EST: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAG GCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAAEST: gi|33678214|gb|CF306453.1|CF306453
genomic: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAGgtaaccagtt ... ggtgttgcagGCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAA
EST: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAG GCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAA
genomic: GCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAGgtaaccagtt ... ggtgttgcagGCACGACTTCTACAACAGTGCTACAGAAGTTGTATTGACAATTTTTGCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCAGCTGCCCCCTCTGTTGCTTCTTTTGTTGAGGAAAAGGATGATGCTGCAAACATGGATAATACACCACCAATGGTAGAAGTGAAGCCAAAATACAGgtaaccagttcatgaatcctttaacactgtgcttcttttcccaatacagttctttagtcaagtatcaagttattctgaattgaggggtccactttatatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaggggt