1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggtgctaaaatgacttagctgcatgtttattttgttttgtttgcaaagacattatcatgctgtttcatattaaagcaacaaattgcactttgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAAGGCTTATCTTCGTAAAGG
species | Oryza sativa |
transcript | LOC_Os01g43540.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|88391756|gb|CI603275.1|CI603275
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|88372467|gb|CI610790.1|CI610790
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|88406262|gb|CI596389.1|CI596389
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|88403836|gb|CI611491.1|CI611491
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|29661448|gb|CB657723.1|CB657723
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|58586137|gb|CF984445.1|CF984445
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAAGGACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACACATCAATGCACAEST: gi|88721089|gb|CI744388.1|CI744388
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|88359446|gb|CI620977.1|CI620977
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|88399100|gb|CI603767.1|CI603767
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|88394529|gb|CI605870.1|CI605870
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|88392765|gb|CI623996.1|CI623996
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|88761660|gb|CI771216.1|CI771216
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|88314415|gb|CI604899.1|CI604899
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|88366470|gb|CI610615.1|CI610615
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|88362624|gb|CI608773.1|CI608773
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTAAACTG AGGCTGTAGCTGATGCTAAAAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|29625917|gb|CB630928.1|CB630928
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACACATCAATGCACAEST: gi|88386386|gb|CI573003.1|CI573003
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|88398004|gb|CI585507.1|CI585507
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|29660561|gb|CB656836.1|CB656836
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|88399716|gb|CI583450.1|CI583450
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|88717989|gb|CI741499.1|CI741499
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|88742943|gb|CI766451.1|CI766451
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|3061193|gb|C91825.1|C91825
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTNGATGCTAACAAEST: gi|163920381|gb|EG714468.1|EG714468
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCT-GATGCTAACAA
EST: AAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|88695854|gb|CI737431.1|CI737431
genomic: AAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|2312755|gb|C28910.1|C28910
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|88426989|gb|CI601950.1|CI601950
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: TCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACC-ATCAATGCACAEST: gi|286480|gb|D15287.1|D15287
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|12404713|gb|AU166314.1|AU166314
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|88364728|gb|CI612543.1|CI612543
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|88423764|gb|CI617116.1|CI617116
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|29659289|gb|CB655564.1|CB655564
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|88371307|gb|CI600155.1|CI600155
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGAACCATCAATGCACAEST: gi|88763618|gb|CI773065.1|CI773065
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|29669129|gb|CB665404.1|CB665404
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|29658976|gb|CB655251.1|CB655251
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|88357631|gb|CI623685.1|CI623685
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGGCCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAAATTGACCCATCAATGCACAEST: gi|88316637|gb|CI622883.1|CI622883
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTAAGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGTTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAEST: gi|2309664|gb|C25819.1|C25819
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGNCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGNCATTGAACTTGACCCATCAATGCACAEST: gi|33678214|gb|CF306453.1|CF306453
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
EST: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTG AGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
genomic: GCTCTACGCCGACCGCGCCCAGGCCCATATCAAGCTAGGCAACTACACTGgtaatccatc ... tgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACA
aagacattatcatgctgtttcatattaaagcaacaaattgcactttgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAAGGCTTATCTTCGTAAAGG
ctttgtctt CT-rich tract
tgtttcatattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtgctaaaatgacttagctgcatgtttattttgttttgtttgcaaagacattatcatgctgtttcatattaaagcaacaaattgcactttgtcttgcagAGGCTGTAGCTGATGCTAACAAGGCCATTGAACTTGACCCATCAATGCACAAGGCTTATCTTCGTAAAGG
ggtgcta
- - - - - - - - - -tgcatgt
- - - - - - - - - - - - - - - - - - -tgtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcactt