1 5' 3' | 2 5' 3' | 3 5' 3' |
...aggatgcaatgcgttcttagatgttattgcttcatacttgacattagattcgaaacacttttgcttgatgaatgctcacgttgctgatttttcaatacagGAGGCGTTAAAACTAGGATCACGCACAAGGCGAAGGCGAAGTCATGATTGAGAAATTATGTATGATTGTTCCCTGTAAAATGTATAGTTCTTCGAGTTTC
species | Oryza sativa |
transcript | LOC_Os01g43360.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCATGCTGCTGCTGAAGTGATTAAAGAAGTTGAGTTTGAGGAAGCTGAAG GAGGCGTTAAAACTAGGATCACGCACAAGGCGAAGGCGAAGTCATGATTGAEST: gi|88438788|gb|CI546270.1|CI546270
genomic: CCATGCTGCTGCTGAAGTGATTAAAGAAGTTGAGTTTGAGGAAGCTGAAGgtatgtatct ... ttcaatacagGAGGCGTTAAAACTAGGATCACGCACAAGGCGAAGGCGAAGTCATGATTGA
EST: CCATGCTGCTGCTGAAGTGATTAAAGAAGTTGAGTTTGAGGAAGCTGAAG GAGGCGTTAAAACTAGGATCACGCACAAGGCGAAGGCGAAGTCATGATTGAEST: gi|88459244|gb|CI516922.1|CI516922
genomic: CCATGCTGCTGCTGAAGTGATTAAAGAAGTTGAGTTTGAGGAAGCTGAAGgtatgtatct ... ttcaatacagGAGGCGTTAAAACTAGGATCACGCACAAGGCGAAGGCGAAGTCATGATTGA
EST: CCATGCTGCTGCTGAAGTGATTAAAGAAGTTGAGTTTGAGGAAGCTGAAG GAGGCGTTAAAACTAGGATCACGCACAAGGCGAAGGCGAAGTCATGATTGA
genomic: CCATGCTGCTGCTGAAGTGATTAAAGAAGTTGAGTTTGAGGAAGCTGAAGgtatgtatct ... ttcaatacagGAGGCGTTAAAACTAGGATCACGCACAAGGCGAAGGCGAAGTCATGATTGA
agattcgaaacacttttgcttgatgaatgctcacgttgctgatttttcaatacagGAGGCGTTAAAACTAGGATCACGCACAAGGCGAAGGCGAAGTCATGATTGAGAAATTATGTATGATTGTTCCCTGTAAAATGTATAGTTCTTCGAGTTTC
tttttc CT-rich tract
atttttcaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggatgcaatgcgttcttagatgttattgcttcatacttgacattagattcgaaacacttttgcttgatgaatgctcacgttgctgatttttcaatacagGAGGCGTTAAAACTAGGATCACGCACAAGGCGAAGGCGAAGTCATGATTGAGAAATTATGTATGATTGTTCCCTGTAAAATGTATAGTTCTTCGAGTTTC
-ggatgca
- - - - -tgcgttc
- - - - - - - - - - - - - ttgcttc
- - - - - - - - - - - - - - - - -atacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgat