1 5' 3' | 2 5' 3' | 3 5' 3' |
GTTTAATGGCCAGCACTAGAAAGAAGGAAATAGTGGATATTATAATTAAGGCTATTAAGAGCAATTCTGAATATCAGCCTCAAGTGGCTTCTTCTAACAGgtatatggctacggtctttgtgatgaagctttggtatcccatactattaaccataggatgtactctgaacaacatctcacatgtagctaatttttctggg...
species | Oryza sativa |
transcript | LOC_Os01g43360.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCTATTAAGAGCAATTCTGAATATCAGCCTCAAGTGGCTTCTTCTAACAG GTTTGAATACCATGCTGCTGCTGAAGTGATTAAAGAAGTTGAGTTTGAGGAEST: gi|88438788|gb|CI546270.1|CI546270
genomic: GCTATTAAGAGCAATTCTGAATATCAGCCTCAAGTGGCTTCTTCTAACAGgtatatggct ... ctctctgtagGTTTGAATACCATGCTGCTGCTGAAGTGATTAAAGAAGTTGAGTTTGAGGA
EST: GCTATTAAGAGCAATTCTGAATATCAGCCTCAAGTGGCTTCTTCTAACAG GTTTGAATACCATGCTGCTGCTGAAGTGATTAAAGAAGTTGAGTTTGAGGAEST: gi|88459244|gb|CI516922.1|CI516922
genomic: GCTATTAAGAGCAATTCTGAATATCAGCCTCAAGTGGCTTCTTCTAACAGgtatatggct ... ctctctgtagGTTTGAATACCATGCTGCTGCTGAAGTGATTAAAGAAGTTGAGTTTGAGGA
EST: GCTATTAAGAGCAATTCTGAATATCAGCCTCAANTGGCTTCTTCTAACAG GTTTGAATACCATGCTGCTGCTGAAGTGATTAAAGAAGTTGAGTTTGAGGA
genomic: GCTATTAAGAGCAATTCTGAATATCAGCCTCAAGTGGCTTCTTCTAACAGgtatatggct ... ctctctgtagGTTTGAATACCATGCTGCTGCTGAAGTGATTAAAGAAGTTGAGTTTGAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTAATGGCCAGCACTAGAAAGAAGGAAATAGTGGATATTATAATTAAGGCTATTAAGAGCAATTCTGAATATCAGCCTCAAGTGGCTTCTTCTAACAGgtatatggctacggtctttgtgatgaagctttggtatcccatactattaaccataggatgtactctgaacaacatctcacatgtagctaatttttctggg
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