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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggttccttcgtttcgtcgtcatcgcgcggtattgtcctgcgtttgccgattttttgctgacgtgatggtgtggcgtggcgtgggtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGGCTTCCGGGCAGCCGCAGTTCAGGTACACGCAGCCGCCGTCGAAGGTGAT

Basic information

species Oryza sativa
transcript LOC_Os01g43170.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88401621|gb|CI588562.1|CI588562
EST:     TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG                         ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: gi|88392333|gb|CI612807.1|CI612807
EST:     TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG                         ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: gi|88434195|gb|CI589260.1|CI589260
EST:     TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG                         ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: gi|88359026|gb|CI619530.1|CI619530
EST:     TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG                         ATTGAAGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: gi|88360620|gb|CI620355.1|CI620355
EST:     TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG                         ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: gi|88402140|gb|CI614983.1|CI614983
EST:     TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG                         ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: gi|88372229|gb|CI619559.1|CI619559
EST:     TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG                         ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: gi|88401991|gb|CI593703.1|CI593703
EST:     TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG                         ATTTGACGGGCGAGGAAGCGAGGAGTGCGTATCTTGGGTGGGTGCGGGGAT
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagA-TTGACGGGCGAGGAAGCGAGGAG-GCGTATCTTGGGTGGGTGCGGGGAT
EST: gi|88723827|gb|CI745524.1|CI745524
EST:     TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG                         ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: gi|88399395|gb|CI606016.1|CI606016
EST:     TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG                         ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: gi|88417614|gb|CI581637.1|CI581637
EST:     TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG                         ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: gi|88311840|gb|CI577446.1|CI577446
EST:     TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG                         ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: gi|88394784|gb|CI622658.1|CI622658
EST:     TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG                         ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: gi|88371532|gb|CI602710.1|CI602710
EST:     TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG                         ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: gi|88393225|gb|CI616709.1|CI616709
EST:     TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG                         ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: gi|88397912|gb|CI583230.1|CI583230
EST:     TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG                         ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: gi|88694575|gb|CI738613.1|CI738613
EST:     TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG                         ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: gi|88337084|gb|CI628170.1|CI628170
EST:     TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG                         ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: gi|88717456|gb|CI740966.1|CI740966
EST:     TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG                         ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: gi|58611208|gb|CK038920.1|CK038920
EST:     TTCCCATCGCCGCCACCGCCGGCGGTCTCAGACTCGCAGCTCTCGCAAAG                         ATTGA----C--GG--GCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: gi|88350834|gb|CI619092.1|CI619092
EST:     TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG                         ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: gi|88311951|gb|CI577557.1|CI577557
EST:     TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG                         ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: gi|58671380|gb|CK060066.1|CK060066
EST:     TTCCCATCGCCGCCACCGCCGGCGGTCTCAGACTCGCAGCTCTCGCAAAG                         ATTGA----C--GG--GCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgtttgccgattttttgctgacgtgatggtgtggcgtggcgtgggtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGGCTTCCGGGCAGCCGCAGTTCAGGTACACGCAGCCGCCGTCGAAGGTGAT
                tgctgac  putative branch site (score: 2)
          atttttt  TA-rich tract