1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGATGGTAACCTCCACTTTGTGGAAACACCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACAgtgagtgttcttacgaaattgctctaccaggggtgtttaatttatgccttcaaattgttgaacgatttctgattgctctgtaatgtgcag
species | Oryza sativa |
transcript | LOC_Os01g42530.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACA GCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGAEST: gi|88291555|gb|CI537341.1|CI537341
genomic: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACAgtgagtgttc ... taatgtgcagGCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGA
EST: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACA GCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGAEST: gi|87030406|gb|CI252683.1|CI252683
genomic: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACAgtgagtgttc ... taatgtgcagGCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGA
EST: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACA GCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGAEST: gi|29684837|gb|CB681112.1|CB681112
genomic: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACAgtgagtgttc ... taatgtgcagGCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGA
EST: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCATCAACA GCACTAGGCTGAACTGGCAGCGGCTGCACCCCAACCACTGCCAGATGATGAEST: gi|58687745|gb|CK076432.1|CK076432
genomic: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACAgtgagtgttc ... taatgtgcagGCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGA
EST: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACA GCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGAEST: gi|88239222|gb|CI240384.1|CI240384
genomic: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACAgtgagtgttc ... taatgtgcagGCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGA
EST: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACA GCACGGGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGAEST: gi|58589544|gb|CF987852.1|CF987852
genomic: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACAgtgagtgttc ... taatgtgcagGCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGA
EST: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACA GCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGAEST: gi|88263174|gb|CI366948.1|CI366948
genomic: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACAgtgagtgttc ... taatgtgcagGCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGA
EST: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACA GCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGAEST: gi|86511798|gb|CI154431.1|CI154431
genomic: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACAgtgagtgttc ... taatgtgcagGCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGA
EST: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACA GCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGAEST: gi|11564790|gb|AU165426.1|AU165426
genomic: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACAgtgagtgttc ... taatgtgcagGCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGA
EST: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACA GCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGAEST: gi|88906919|gb|CI375991.1|CI375991
genomic: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACAgtgagtgttc ... taatgtgcagGCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGA
EST: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACA GCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGAEST: gi|88283026|gb|CI404472.1|CI404472
genomic: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACAgtgagtgttc ... taatgtgcagGCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGA
EST: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATTTAGCAGCCCAGCAACA GCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGAEST: gi|125863363|gb|EL586682.1|EL586682
genomic: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACAgtgagtgttc ... taatgtgcagGCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGA
EST: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACA GCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGAEST: gi|3767896|gb|AU031923.1|AU031923
genomic: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACAgtgagtgttc ... taatgtgcagGCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGA
EST: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACA GCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGAEST: gi|88262960|gb|CI366734.1|CI366734
genomic: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACAgtgagtgttc ... taatgtgcagGCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGA
EST: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACA GCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGAEST: gi|29689309|gb|CB685584.1|CB685584
genomic: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACAgtgagtgttc ... taatgtgcagGCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGA
EST: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACA GCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGAEST: gi|86494370|gb|CI137003.1|CI137003
genomic: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACAgtgagtgttc ... taatgtgcagGCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGA
EST: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACA GCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGAEST: gi|12405389|gb|AU166990.1|AU166990
genomic: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACAgtgagtgttc ... taatgtgcagGCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGA
EST: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACA GCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGAEST: gi|88477395|gb|CI414666.1|CI414666
genomic: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACAgtgagtgttc ... taatgtgcagGCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGA
EST: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACA GCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGAEST: gi|88260768|gb|CI363061.1|CI363061
genomic: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACAgtgagtgttc ... taatgtgcagGCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGA
EST: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACA GCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGAEST: gi|14980874|gb|BI305552.1|BI305552
genomic: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACAgtgagtgttc ... taatgtgcagGCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGA
EST: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACA GCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGA
genomic: CCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACAgtgagtgttc ... taatgtgcagGCACGAGGCTGAACTGGCAGCGGCTGCAGCCCAACCACTGCCAGATGATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATGGTAACCTCCACTTTGTGGAAACACCTGCTCTTGCTCCTCCAGATGTCACAATTGATCTAGCAGCCCAGCAACAgtgagtgttcttacgaaattgctctaccaggggtgtttaatttatgccttcaaattgttgaacgatttctgattgctctgtaatgtgcag
- - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - CAGATG