1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgatcgccccgctcccctccatggcctctctcgccctatcaatccttcgatctccccccaatctcaccctcaccgtcgttgcgtttgttttttttttacttttttttagGCGCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATCGTCGGCGACGGCGGCACGG
species | Oryza sativa |
transcript | LOC_Os01g42530.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCACGGAAGCCGCCGCCAATG GCGCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATCEST: gi|88329358|gb|CI653273.1|CI653273
genomic: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCACGGAAGCCGCCGCCAATGgtgatcgccc ... ttttttttagGCGCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATC
EST: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCACGGAAGCCGCCGCCAATG GCGCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATCEST: gi|88326643|gb|CI658364.1|CI658364
genomic: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCACGGAAGCCGCCGCCAATGgtgatcgccc ... ttttttttagGCGCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATC
EST: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCANGGAAGCCGCCGCCAATG GCGCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATCEST: gi|88825209|gb|CI775774.1|CI775774
genomic: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCACGGAAGCCGCCGCCAATGgtgatcgccc ... ttttttttagGCGCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATC
EST: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCACGGAAGCCGCCGCCAATG GCGCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATCEST: gi|88696329|gb|CI739904.1|CI739904
genomic: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCACGGAAGCCGCCGCCAATGgtgatcgccc ... ttttttttagGCGCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATC
EST: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCACGGAAGCCGCCGCCAATG GCGCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATCEST: gi|2311042|gb|C27197.1|C27197
genomic: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCACGGAAGCCGCCGCCAATGgtgatcgccc ... ttttttttagGCGCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATC
EST: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCACGGAAGCCGCCGCCAATG G-GCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATCEST: gi|88346234|gb|CI634107.1|CI634107
genomic: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCACGGAAGCCGCCGCCAATGgtgatcgccc ... ttttttttagGCGCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATC
EST: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCACGGAAGCCGCCGCCAATG GCGCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATCEST: gi|88352570|gb|CI654395.1|CI654395
genomic: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCACGGAAGCCGCCGCCAATGgtgatcgccc ... ttttttttagGCGCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATC
EST: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCACGGAAGCCGCCGCCAATG GCGCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATCEST: gi|25802747|gb|CA758708.1|CA758708
genomic: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCACGGAAGCCGCCGCCAATGgtgatcgccc ... ttttttttagGCGCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATC
EST: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCACGGAAGCCGCCGCCAATG GCGCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATCEST: gi|56158064|gb|C72115.2|C72115
genomic: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCACGGAAGCCGCCGCCAATGgtgatcgccc ... ttttttttagGCGCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATC
EST: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCACGGAAGCCGCCGCCAATG GCGCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATCEST: gi|428684|gb|D24836.1|D24836
genomic: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCACGGAAGCCGCCGCCAATGgtgatcgccc ... ttttttttagGCGCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATC
EST: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCACGGAAGCCGCCGCCAATG G-GCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATCEST: gi|88720998|gb|CI744297.1|CI744297
genomic: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCACGGAAGCCGCCGCCAATGgtgatcgccc ... ttttttttagGCGCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATC
EST: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCACGGAAGCCGNCGCCAATG GCGCTCCCGAATCAGCAGACGGTGGACTNA-CCCAGCTTCAAGCTCGTCATEST: gi|88290672|gb|CI667045.1|CI667045
genomic: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCACGGAAGCCGCCGCCAATGgtgatcgccc ... ttttttttagGCGCTCCCGAATCAGCAGACGGTGGACT-ACCCCAGCTTCAAGCTCGTCAT
EST: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCACGGAAGCCGCCGCCAATG GCGCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATCEST: gi|55442434|gb|CV734535.1|CV734535
genomic: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCACGGAAGCCGCCGCCAATGgtgatcgccc ... ttttttttagGCGCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATC
EST: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCACGGAAGCCGCCGCCAATG GCGCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATC
genomic: CCTCCGCGTGCCTCCCCCCAATCTCGAGCGCACGGAAGCCGCCGCCAATGgtgatcgccc ... ttttttttagGCGCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATC
cccccaatctcaccctcaccgtcgttgcgtttgttttttttttacttttttttagGCGCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATCGTCGGCGACGGCGGCACGG
ccctcac putative branch site (score: 11)
ttgcgtttgttttttt putative PPT
tttgttttttttttac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatcgccccgctcccctccatggcctctctcgccctatcaatccttcgatctccccccaatctcaccctcaccgtcgttgcgtttgttttttttttacttttttttagGCGCTCCCGAATCAGCAGACGGTGGACTACCCCAGCTTCAAGCTCGTCATCGTCGGCGACGGCGGCACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT