1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttaggtgtccatgtttgctactttctgtgccttatctgctcttttttccagtatcatcaacatacttaatgaatatttatcttgattaccatgtttacagGAGCTTATACGTGATGCTTTACAACTAAATTGTATCGCTAAGCCTATTAACCACCCAACTTATGATGATCCAAACAATG
species | Oryza sativa |
transcript | LOC_Os01g42460.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGTGTACATTCAAAATCTTGACATACAGTTTGCAGCTGCTGACATAGAG GAGCTTATACGTGATGCTTTACAACTAAATTGTATCGGTAAGGCTATTAAAEST: gi|58687930|gb|CK076617.1|CK076617
genomic: TTGTGTACATTCAAAATCTTGACATACAGTTTGCAGCTGCTGACATAGAGgtattgtctt ... atgtttacagGAGCTTATACGTGATGCTTTACAACTAAATTGTATCGCTAAGCCTATTAAC
EST: TTGTGTACATTCAAAATCTTGACATACAGTTTGCAGCTGCTGACATAGAG GAGCTTATACGTGATGCTTTACAACTAAATTGTATCGCTAAGCCT
genomic: TTGTGTACATTCAAAATCTTGACATACAGTTTGCAGCTGCTGACATAGAGgtattgtctt ... atgtttacagGAGCTTATACGTGATGCTTTACAACTAAATTGTATCGCTAAGCCT
ttccagtatcatcaacatacttaatgaatatttatcttgattaccatgtttacagGAGCTTATACGTGATGCTTTACAACTAAATTGTATCGCTAAGCCTATTAACCACCCAACTTATGATGATCCAAACAATG
tcttgat putative branch site (score: 19)
atacttaatgaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaggtgtccatgtttgctactttctgtgccttatctgctcttttttccagtatcatcaacatacttaatgaatatttatcttgattaccatgtttacagGAGCTTATACGTGATGCTTTACAACTAAATTGTATCGCTAAGCCTATTAACCACCCAACTTATGATGATCCAAACAATG
- - - gtccatg
- - - - - - - -tgctact
- - - - - - - - - - - - - gtgcctt
- - - - - - - - - - - - - - - - -atctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacata