1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCCTCCTCCTCCCTCTCCCACCGCGGCCTCCTCCTGCTACCTGGGAGCCACGCGCCCCCGGCCTCCACCTCGCCGCCCTCCTCGCCGGCGGCCGCCACGCgtgagtcctctcccctcttcctccccgccgtcccccgtcactgttccgcgctggatttcgctgcgcggccgcgcgtggttccgcccccaaccccccaccg...
species | Oryza sativa |
transcript | LOC_Os01g42460.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCGCCCCCGGCCTCCACCTCGCCGCCCTCCTCGCCGGCGGCCGCCACGC GCTTATGGTGAGTGCACAGTGAGCTACAAGTTACCATTATCAGAATGGATG
genomic: CGCGCCCCCGGCCTCCACCTCGCCGCCCTCCTCGCCGGCGGCCGCCACGCgtgagtcctc ... atcactctagGCTTATGGTGAGTGCACAGTGAGCTACAAGTTACCATTATCAGAATGGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTCCTCCTCCCTCTCCCACCGCGGCCTCCTCCTGCTACCTGGGAGCCACGCGCCCCCGGCCTCCACCTCGCCGCCCTCCTCGCCGGCGGCCGCCACGCgtgagtcctctcccctcttcctccccgccgtcccccgtcactgttccgcgctggatttcgctgcgcggccgcgcgtggttccgcccccaaccccccaccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcccc
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggccgcg
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccacc