1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
gtaagtaaaatgccactttctatatgcaaagagggtgtaccttagaaatcttattcatttcgtgcttcttaatccagGACGAAGTCACAAGACTTGTTCAATGCCATGGGGTCAATGTATGCAGCAGTGCTGTTCATCGGTGTCATGAACTGTACATCTGTTCAGCCAGTGGTGGCC
species | Oryza sativa |
transcript | LOC_Os01g42380.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: TCATTGCTCTTCTCTTTGGTACCGATGTTCTGGGACCTTGGCGGCAAAGT GACGAAGTCACAAGACTTGTTCAATGCCATGGGGTCAATGTATGCAGCAGTEST: gi|33678228|gb|CF306467.1|CF306467
genomic: TCATTGCTCTTCTCTTTGGTACC-ATCTTCTGGGACCTTGGCGGCAAAGTgtaagtaaaa ... cttaatccagGACGAAGTCACAAGACTTGTTCAATGCCATGGGGTCAATGTATGCAGCAGT
EST: GTCATTGCTCTTCTCTTTGGTACCATCTTCTGGGACCTTGGCGGCAAAGT GGACGAAGTCACAAGACTTGTTCAATGCCATGGGGTCAATGEST: gi|38469656|gb|CF953787.1|CF953787
genomic: GTCATTGCTCTTCTCTTTGGTACCATCTTCTGGGACCTTGGCGGCAAAGTgtaagtaaaa ... cttaatccagG-ACGAAGTCACAAGACTTGTTCAATGCCATGGGGTCAATG
EST: GTCATTGCTCTTCTCTTTGGTACCATCTTCTGGGACCTTGGCGGCAAAGT GACGAAGTCACAAGACTTGTTCAATGCCATGGGGTCAATGTATGCAGCAGTEST: gi|33677918|gb|CF306157.1|CF306157
genomic: GTCATTGCTCTTCTCTTTGGTACCATCTTCTGGGACCTTGGCGGCAAAGTgtaagtaaaa ... cttaatccagGACGAAGTCACAAGACTTGTTCAATGCCATGGGGTCAATGTATGCAGCAGT
EST: GTCATTGCTCTTCTCTTTGGTACCATCTTCTGGGACCTTGGCGGCAAAGT GACGAAGTCACAAGACTTGTTCAATGCCATGGGGTCAATGTATGCAGCAGTEST: gi|29614736|gb|CB619749.1|CB619749
genomic: GTCATTGCTCTTCTCTTTGGTACCATCTTCTGGGACCTTGGCGGCAAAGTgtaagtaaaa ... cttaatccagGACGAAGTCACAAGACTTGTTCAATGCCATGGGGTCAATGTATGCAGCAGT
EST: GTCATTGCTCTTCTCTTTGGTACCATCTTCTGGGACCTTGGCGGCAAAGT GACGAAGTCACAAGACTTGTTCAATGCCATGGGGTCAATGTATGCAGCAGT
genomic: GTCATTGCTCTTCTCTTTGGTACCATCTTCTGGGACCTTGGCGGCAAAGTgtaagtaaaa ... cttaatccagGACGAAGTCACAAGACTTGTTCAATGCCATGGGGTCAATGTATGCAGCAGT
tatgcaaagagggtgtaccttagaaatcttattcatttcgtgcttcttaatccagGACGAAGTCACAAGACTTGTTCAATGCCATGGGGTCAATGTATGCAGCAGTGCTGTTCATCGGTGTCATGAACTGTACATCTGTTCAGCCAGTGGTGGCC
tcttaat putative branch site (score: 5)
tgcttctt CT-rich tract
aaatcttattcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaaaatgccactttctatatgcaaagagggtgtaccttagaaatcttattcatttcgtgcttcttaatccagGACGAAGTCACAAGACTTGTTCAATGCCATGGGGTCAATGTATGCAGCAGTGCTGTTCATCGGTGTCATGAACTGTACATCTGTTCAGCCAGTGGTGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG