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CTTTTCCTGATGAAGCGAGGTGGTGAAGAGATCTATGCTGGTCCACTAGGCCATCATTCTTCGGAGCTGATCAAGTATTTTGAGgtaagtgatattacactaattctaatatacctcaatgacatttcttcaaaattactgattcaatcgcatctttgtgtatcatccag
species | Oryza sativa |
transcript | LOC_Os01g42380.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: NTGCTGGTCCACTAGGCCATCATTCTTCGGAGCTGATCAAGTATTTTGAG AGTATCCCAGGGGTCAGCAAAATCAAAGATGGCTATAACCCAGCAACATGGEST: gi|33678228|gb|CF306467.1|CF306467
genomic: -TGCTGGTCCACTAGGCCATCATTCTTCGGAGCTGATCAAGTATTTTGAGgtaagtgata ... tatcatccagAGTATCCCAGGGGTCAGCAAAATCAAAGATGGCTATAACCCAGCAACATGG
EST: ATGCTGGTCCACTAGGCCATCATTCTTCGGAGCTGATCAAGTATTTTGAG AGTATCCCAGGGGTCAGCAAAATCAAAGATGGCTATAACCCAGCAACATGGEST: gi|87004912|gb|CI308788.1|CI308788
genomic: ATGCTGGTCCACTAGGCCATCATTCTTCGGAGCTGATCAAGTATTTTGAGgtaagtgata ... tatcatccagAGTATCCCAGGGGTCAGCAAAATCAAAGATGGCTATAACCCAGCAACATGG
EST: ATGCTGGTCCACTAGGCCATCATTCTTCGGAGCTGATCAAGTATTTTGAG AGTATCCCAGGGGTCAGCAAAATCAAAGATGGCTATAACCCAGCAACATGGEST: gi|33677918|gb|CF306157.1|CF306157
genomic: ATGCTGGTCCACTAGGCCATCATTCTTCGGAGCTGATCAAGTATTTTGAGgtaagtgata ... tatcatccagAGTATCCCAGGGGTCAGCAAAATCAAAGATGGCTATAACCCAGCAACATGG
EST: ATGCTGGTCCACTAGGCCATCATTCTTCGGAGCTGATCAAGTATTTTGAG AGTATCCCAGGGGTCAGCAAAATCAAAGATGGCTATAACCCAGCAACATGGEST: gi|86876761|gb|CI309645.1|CI309645
genomic: ATGCTGGTCCACTAGGCCATCATTCTTCGGAGCTGATCAAGTATTTTGAGgtaagtgata ... tatcatccagAGTATCCCAGGGGTCAGCAAAATCAAAGATGGCTATAACCCAGCAACATGG
EST: ATGCTGGTCCACTAGGCCATCATTCTTCGGAGCTGATCAAGTATTTTGAG AGTATCCCAGGGGTCAGCAAAATCAAAGATGGCTATAACCCAGCAACATGGEST: gi|29614736|gb|CB619749.1|CB619749
genomic: ATGCTGGTCCACTAGGCCATCATTCTTCGGAGCTGATCAAGTATTTTGAGgtaagtgata ... tatcatccagAGTATCCCAGGGGTCAGCAAAATCAAAGATGGCTATAACCCAGCAACATGG
EST: ATGCTGGTCCACTAGGCCATCATTCTTCGGAGCTGATCAAGTATTTTGAG AGTATCCCAGGGGTCAGCAAAATCAAAGATGGCTATAACCCAGCAACATGG
genomic: ATGCTGGTCCACTAGGCCATCATTCTTCGGAGCTGATCAAGTATTTTGAGgtaagtgata ... tatcatccagAGTATCCCAGGGGTCAGCAAAATCAAAGATGGCTATAACCCAGCAACATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTTCCTGATGAAGCGAGGTGGTGAAGAGATCTATGCTGGTCCACTAGGCCATCATTCTTCGGAGCTGATCAAGTATTTTGAGgtaagtgatattacactaattctaatatacctcaatgacatttcttcaaaattactgattcaatcgcatctttgtgtatcatccag
- - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT