Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTCTTATAAGGACCTCTATGGCTGGACAATGGATGATATTGTGAAAGCAATTGGCCTAAAAAATAATTGTACCTTTTGTGGTGTTTTTCGACGTCAGgtaattcttacttgcctctttggtgcaattttttactagttataggttaagctttactgccaatccttttttctag

Basic information

species Oryza sativa
transcript LOC_Os01g41565.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g41565.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G402242_T02 (Zea mays), 5'ss of exon 4
AATTTCTTATAAGGACCTCTATGGCTGGACAATGGATGATATTGTGAAAGCAATTGGCCTAAAAAATAATTGTACCTTTTGTGGTGTTTTTCGACGTCAGgtaattcttacttgcctctttggtgcaattttttactagttataggttaagctttactgccaatccttttttctag--
  |||| ||||| ||  | |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| || ||||| |||||||||||||||||| |  ||||||||     |    ||  | | |   | |  |   |  | ||| || | |||||||||| | |    
TGTTTCCTATAAAGATTTGTATGGCTGGACAATGGATGATATTGTCAAAGCAATTGGTCTAAAAAACAATTGTACTTTCTGTGGAGTTTTTCGACGTCAGgtactctttacttgcaagcctttcacatgtatctttaattcttcactccatcttcacagacaatccttttctatgtag

upper sequence: LOC_Os01g41565.1 (Oryza sativa), 5'ss of exon 4
lower sequence: AT2G44270.1 (Arabidopsis thaliana), 5'ss of exon 4
AATTTCTTATAAGGACCTCTATGGCTGGACAATGGATGATATTGTGAAAGCAATTGGCCTAAAAAATAATTGTACCTTTTGTGGTGTTTTTCGACGTCAGgta------attcttacttgcctctt-tggtgcaattttttactagttataggttaagctttactgccaatccttttttctag-------------
  |||| ||||| || || ||||| |||||||||||||| |||||||||   |||||  | || || ||||| |||||||||||||| || || || ||||||      | |     || | | || | || ||| |||    | || |     |  || | ||  ||||  || || | |               
TGTTTCATATAAAGATCTGTATGGATGGACAATGGATGAGATTGTGAAAATGATTGGTTTGAAGAACAATTGCACCTTTTGTGGTGTATTCCGTCGACAGgtagggagcagtgccgttttctttttgttgttcaactttcagtttgtcaataactctgcat-accaccaacactcttgtgtttaattcatctcaag