1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGGGCAATGTGCCTCTGGGAGCAAATGGGGCAGCCAGAGAAAGTCAATCTGATTGAGCTTGGTCCAGGGCGCGGAACTCTCTTGGCAGATTTACTTCGTgtaatgcatttctgcttgcatctatcctattttgaactttcccgatttgtgtctttgactgatgcatccattggaacag
species | Oryza sativa |
transcript | LOC_Os01g40620.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGATTGAGCTTGGTCCAGGGCGCGGAACTCTCTTGGCAGATTTACTTCGT GGGTCATCAAAATTTGTTAATTTCACCAAAGCACTCAACATTAACTTGGTAEST: gi|29644655|gb|CB649662.1|CB649662
genomic: TGATTGAGCTTGGTCCAGGGCGCGGAACTCTCTTGGCAGATTTACTTCGTgtaatgcatt ... attggaacagGGGTCATCAAAATTTGTTAATTTCACCAAAGCACTCAACATTAACTTGGTA
EST: TCTTGGCAGATTTACTTCGT GGGTCATCAAAATTTGTTAATTTCACCAAAGCACTCAACATTAACTTGGTA
genomic: TCTTGGCAGATTTACTTCGTgtaatgcatt ... attggaacagGGGTCATCAAAATTTGTTAATTTCACCAAAGCACTCAACATTAACTTGGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGGCAATGTGCCTCTGGGAGCAAATGGGGCAGCCAGAGAAAGTCAATCTGATTGAGCTTGGTCCAGGGCGCGGAACTCTCTTGGCAGATTTACTTCGTgtaatgcatttctgcttgcatctatcctattttgaactttcccgatttgtgtctttgactgatgcatccattggaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT