Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgcatttctgcttgcatctatcctattttgaactttcccgatttgtgtctttgactgatgcatccattggaacagGGGTCATCAAAATTTGTTAATTTCACCAAAGCACTCAACATTAACTTGGTAGAATGTAGCCCCACGTTACAAAAGGTGCAATACAATACTCTGAAATGTG

Basic information

species Oryza sativa
transcript LOC_Os01g40620.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|25800535|gb|CA756496.1|CA756496
EST:     TGATTGAGCTTGGTCCAGGGCGCGGAACTCTCTTGGCAGATTTACTTCGT                         GGGTCATCAAAATTTGTTAATTTCACCAAAGCACTCAACATTAACTTGGTA
genomic: TGATTGAGCTTGGTCCAGGGCGCGGAACTCTCTTGGCAGATTTACTTCGTgtaatgcatt ... attggaacagGGGTCATCAAAATTTGTTAATTTCACCAAAGCACTCAACATTAACTTGGTA
EST: gi|29644655|gb|CB649662.1|CB649662
EST:     TCTTGGCAGATTTACTTCGT                         GGGTCATCAAAATTTGTTAATTTCACCAAAGCACTCAACATTAACTTGGTA
genomic: TCTTGGCAGATTTACTTCGTgtaatgcatt ... attggaacagGGGTCATCAAAATTTGTTAATTTCACCAAAGCACTCAACATTAACTTGGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctattttgaactttcccgatttgtgtctttgactgatgcatccattggaacagGGGTCATCAAAATTTGTTAATTTCACCAAAGCACTCAACATTAACTTGGTAGAATGTAGCCCCACGTTACAAAAGGTGCAATACAATACTCTGAAATGTG
                                gactgat  putative branch site (score: 3)
     ttttgaa  TA-rich tract