1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
AGAAAGAATTACTTTCAAAGCTGGAGAGTCACGGAAAGAGCGTTGTTGAATCAAAGGCAAAAGAGGAAGCTGCAAGGGTCTTGATTCGGATGAAGGACAGgtgagctgcacaccaaatgttgattcaaatgatatgtgttttcagagactaattggatgaaaaacatgaag
species | Oryza sativa |
transcript | LOC_Os01g39310.3 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: TCAAAGGCAAAAGAGGAAGCTGCAAGGGTCTTGATTCGGATGAAGGACAG GTTCTCAACACTATTCAGCCGTGATGCTGACTCAATGCCAAGAGTGTGGACEST: gi|218488553|gb|FG950540.1|FG950540
genomic: TCAAAGGCAAAAGAGGAAGCTGCAAGGGTCTTGATTCGGATGAAGGACAGgtgagctgca ... aaacatgaagGTTCTCAACACTATTCAGCCGTGATGCTGACTCAATGCCAAGAGTGTGGAC
EST: TCAAAGGCAAAAGAGGAAGCTGCAAGGGTCTTGATTCGGATGAAGGACAG GTTCTCAACACTATTCAGCCGTGATGCTGACTCAATGCCAAGAGTGTTGACEST: gi|157650537|gb|EX450171.1|EX450171
genomic: TCAAAGGCAAAAGAGGAAGCTGCAAGGGTCTTGATTCGGATGAAGGACAGgtgagctgca ... aaacatgaagGTTCTCAACACTATTCAGCCGTGATGCTGACTCAATGCCAAGAGTGTGGAC
EST: TCAAAGGCAAAAGAGGAAGCTGCAAGGGTCTTGATTCGGATGAAGGACAG GTTCTCAACACTATTCAGCCGTGATGCTGACTCAATGCCAAGAGTGTGGACEST: gi|58661464|gb|CK050144.1|CK050144
genomic: TCAAAGGCAAAAGAGGAAGCTGCAAGGGTCTTGATTCGGATGAAGGACAGgtgagctgca ... aaacatgaagGTTCTCAACACTATTCAGCCGTGATGCTGACTCAATGCCAAGAGTGTGGAC
EST: TCAAAGGCAAAAGAGGAAGCTGCAAGGGTCTTGATTCGGATGAAGGACAG GTTCTCAACACTATTCAGCCGTGATGCTGACTCAATGCCAAGAGTGTGGEST: gi|88584803|gb|CI702382.1|CI702382
genomic: TCAAAGGCAAAAGAGGAAGCTGCAAGGGTCTTGATTCGGATGAAGGACAGgtgagctgca ... aaacatgaagGTTCTCAACACTATTCAGCCGTGATGCTGACTCAATGCCAAGAGTGTGG
EST: TCAAAGGCAAAAGAGGAAGCTGCAAGGGTCTTGATTCGGATGAAGGACAG GTTCTCAACACTATTCAGCCGTGATGCTGACTCAATGCCAAGAGTGTGGACEST: gi|66924925|gb|CX111773.1|CX111773
genomic: TCAAAGGCAAAAGAGGAAGCTGCAAGGGTCTTGATTCGGATGAAGGACAGgtgagctgca ... aaacatgaagGTTCTCAACACTATTCAGCCGTGATGCTGACTCAATGCCAAGAGTGTGGAC
EST: TCAAAGGCGAAAGAGGAAGCTGCAAGGGTCTTGATTCGGATGAAGGACAG GTTCTCAACACTATTCAGCCGTGATGCTGACTCAATGCCAAGAGTGTGGACEST: gi|88584977|gb|CI702576.1|CI702576
genomic: TCAAAGGCAAAAGAGGAAGCTGCAAGGGTCTTGATTCGGATGAAGGACAGgtgagctgca ... aaacatgaagGTTCTCAACACTATTCAGCCGTGATGCTGACTCAATGCCAAGAGTGTGGAC
EST: TCAAAGGCAAAAGAGGAAGCTGCAAGGGTCTTGATTCGGATGAAGGACAG GTTCTCAACACTATTCAGCCGTGATGCTGACTCAATGCCAAGAGTGTGGACEST: gi|95100913|gb|CI692635.1|CI692635
genomic: TCAAAGGCAAAAGAGGAAGCTGCAAGGGTCTTGATTCGGATGAAGGACAGgtgagctgca ... aaacatgaagGTTCTCAACACTATTCAGCCGTGATGCTGACTCAATGCCAAGAGTGTGGAC
EST: TCAAAGGCAAAAGAGGAAGCTGCAAGGGTCTTGATTCGGATGAAGGACAG GTTCTCAACACTATTCAGCCGTGATGCTGACTCAATGCCAAGAGTGTGGAC
genomic: TCAAAGGCAAAAGAGGAAGCTGCAAGGGTCTTGATTCGGATGAAGGACAGgtgagctgca ... aaacatgaagGTTCTCAACACTATTCAGCCGTGATGCTGACTCAATGCCAAGAGTGTGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAAGAATTACTTTCAAAGCTGGAGAGTCACGGAAAGAGCGTTGTTGAATCAAAGGCAAAAGAGGAAGCTGCAAGGGTCTTGATTCGGATGAAGGACAGgtgagctgcacaccaaatgttgattcaaatgatatgtgttttcagagactaattggatgaaaaacatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC