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GAGTGGCAACAATTTGAGGAAGCTGTTCAACATGATTACGTGCCTGGGTTTGGGAAGAAGATCAGCAACCTTCTTGACAGATGCTTATCAGAgtgagttcatcagtaccttttgaccaatactattttttttaattcgggctatgatattcccaagatttgcataactcatgggggactggtcggttactgc...
species | Oryza sativa |
transcript | LOC_Os01g39310.3 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CTGGGTTTGGGAAGAAGATCAGCAACCCTTCTTGACAGATGCTTATCAGA GTATGACATGGAGGCTATTTATTTTGATGAAGGTGTCAGAACTTCGAAAAGEST: gi|58665350|gb|CK054036.1|CK054036
genomic: CTGGGTTTGGGAAGAAGATCAGCAACC-TTCTTGACAGATGCTTATCAGAgtgagttcat ... taaattgtagGTATGACATGGAGGCTATTTATTTTGATGAAGGTGTCAGAACTTCGAAAAG
EST: GACAGATGCTTATCAGA GTATGACATGGAGGCTATTTATTTTGATGAAGGTGTCAGAACTTCGAAAAGEST: gi|426285|gb|D22147.1|D22147
genomic: GACAGATGCTTATCAGAgtgagttcat ... taaattgtagGTATGACATGGAGGCTATTTATTTTGATGAAGGTGTCAGAACTTCGAAAAG
EST: CCTGGGTTTGGGAAGAAGATCAGCAACCTTCTTGACAGATGCTTATCAGA GTATGACATGGAGGCTATTTATTTTGATGAAGGTGTCAGAACTTCGAAAAGEST: gi|88665693|gb|CI715849.1|CI715849
genomic: CCTGGGTTTGGGAAGAAGATCAGCAACCTTCTTGACAGATGCTTATCAGAgtgagttcat ... taaattgtagGTATGACATGGAGGCTATTTATTTTGATGAAGGTGTCAGAACTTCGAAAAG
EST: CCTGGGTTTGGGAAGAAGATCAGCAACCTTCTTGACAGATGCTTATCAGA GTATGACATGGAGGCTATTTATTTTGATGAAGGTGTCAGAACTTCGAAAAG
genomic: CCTGGGTTTGGGAAGAAGATCAGCAACCTTCTTGACAGATGCTTATCAGAgtgagttcat ... taaattgtagGTATGACATGGAGGCTATTTATTTTGATGAAGGTGTCAGAACTTCGAAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTGGCAACAATTTGAGGAAGCTGTTCAACATGATTACGTGCCTGGGTTTGGGAAGAAGATCAGCAACCTTCTTGACAGATGCTTATCAGAgtgagttcatcagtaccttttgaccaatactattttttttaattcgggctatgatattcccaagatttgcataactcatgggggactggtcggttactgc
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggggac