1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gtattaggttaactaatctatgcagattttagaaatatcacattatatgtagaatttacttattttaatacggaggagactgacttgctctgtttttcagGAGAAACATCCGTTGTACATTCCGAGCCGTGATGAAATTGTTGAATATGCAAGTAGGAAGGAAGAGGAAGGGGACATATACTTTAACTTGGGTAAACATT
species | Oryza sativa |
transcript | LOC_Os01g38229.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CGCGCAATGCAACCGTCGTCTACAAGATCGAGCTCTTGTCCGTCGTTAAT GAGAAACATCCGTTGTACATTCCGAGCCGTGATGAAATTGTTGAATATGCAEST: gi|27576983|gb|CA999677.1|CA999677
genomic: CGCGCAATGCAACCGTCGTCTACAAGATCGAGCTCTTGTCCGTCGTTAATgtacgttatt ... tgtttttcagGAGAAACATCCGTTGTACATTCCGAGCCGTGATGAAATTGTTGAATATGCA
EST: CGCGCAATGCAACCGTCGTCTACAAGATCGAGCTCTTGTCCGTCGTTAAT GAGAAACATCCGTTGTACATTCCGAGCCGTGATGAAATTGTTGAATATEST: gi|87007798|gb|CI287642.1|CI287642
genomic: CGCGCAATGCAACCGTCGTCTACAAGATCGAGCTCTTGTCCGTCGTTAATgtacgttatt ... tgtttttcagGAGAAACATCCGTTGTACATTCCGAGCCGTGATGAAATTGTTGAATAT
EST: CGCGCAATGCAACCGTCGTCTACAAGATCGAGCTCTTGTCCGTCGTTAAT GAGAAACATCCGTTGTACATTCCGAGCCGTGATGAAATTGTTGAATATGCA
genomic: CGCGCAATGCAACCGTCGTCTACAAGATCGAGCTCTTGTCCGTCGTTAATgtacgttatt ... tgtttttcagGAGAAACATCCGTTGTACATTCCGAGCCGTGATGAAATTGTTGAATATGCA
tatgtagaatttacttattttaatacggaggagactgacttgctctgtttttcagGAGAAACATCCGTTGTACATTCCGAGCCGTGATGAAATTGTTGAATATGCAAGTAGGAAGGAAGAGGAAGGGGACATATACTTTAACTTGGGTAAACATT
gactgac putative branch site (score: 12)
cttgctctgtttttc CT-rich tract
agaatttacttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattaggttaactaatctatgcagattttagaaatatcacattatatgtagaatttacttattttaatacggaggagactgacttgctctgtttttcagGAGAAACATCCGTTGTACATTCCGAGCCGTGATGAAATTGTTGAATATGCAAGTAGGAAGGAAGAGGAAGGGGACATATACTTTAACTTGGGTAAACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - -ctatgca
- - - - - - - - - - - - - - - - - - - - - - atatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacttg