1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tttaactttttccttggttacgtaaatatttaattcaacataaatatatatcgcgcgatcaggtacctgcggtacaaatactaacaaagtaacaatacagGTGCTGAACTACGATGTGGCTAATGTGCAAGCCCAGCAGCAGCAAACGTTGTTGCAGGAATTTCCTGATGGTTCCTCAAGAGACCCGGACGCAATGCAGC
species | Oryza sativa |
transcript | LOC_Os01g38229.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GCGCAATCCAGCTAGGGTGCTACATGCAAGCATCGTGCTATTACAGCGAG GTGCTGAACTACGATGTGGCTAATGTGCAAGCCCAGCAGCAGCAAACGTTGEST: gi|157651204|gb|EX450838.1|EX450838
genomic: GCGCAATCCAGCTAGGGTGCTACATGCAAGCATCGTGCTATTACAGCGAGgtaaatttta ... aacaatacagGTGCTGAACTACGATGTGGCTAATGTGCAAGCCCAGCAGCAGCAAACGTTG
EST: GCGCAATCCAGCTAGGGTGCTACATGCAAGCATCGTGCTATTACAGCGAG GTGCTGAACTACGATGTGGCTAATGTGCAAGCCCAGCAGCAGCAAACGTTG
genomic: GCGCAATCCAGCTAGGGTGCTACATGCAAGCATCGTGCTATTACAGCGAGgtaaatttta ... aacaatacagGTGCTGAACTACGATGTGGCTAATGTGCAAGCCCAGCAGCAGCAAACGTTG
atatatcgcgcgatcaggtacctgcggtacaaatactaacaaagtaacaatacagGTGCTGAACTACGATGTGGCTAATGTGCAAGCCCAGCAGCAGCAAACGTTGTTGCAGGAATTTCCTGATGGTTCCTCAAGAGACCCGGACGCAATGCAGC
aaatactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaactttttccttggttacgtaaatatttaattcaacataaatatatatcgcgcgatcaggtacctgcggtacaaatactaacaaagtaacaatacagGTGCTGAACTACGATGTGGCTAATGTGCAAGCCCAGCAGCAGCAAACGTTGTTGCAGGAATTTCCTGATGGTTCCTCAAGAGACCCGGACGCAATGCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - -caacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taacaaa