1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAGATATGGAAAGAGAACAGTGTGTAAATCTCTTCATGAGAAGGTTTTATGTATCTTAGTTCCAGCTGGACTTCTCAAGGATGCATACGTAGTTGTTAAGgtactatacttatgcaattcagtgttgacatctctgttgttaccttgttcactatgaatgctatttgaacag
species | Oryza sativa |
transcript | LOC_Os01g37870.3 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGACTTCTCAAGGATGCATACGTAGTTGTTAAG GACAATTCCGAGTTCATATCTCGACGCTCGCTGGGGAATTTTGCTAGATCTEST: gi|29666485|gb|CB662760.1|CB662760
genomic: GGACTTCTCAAGGATGCATACGTAGTTGTTAAGgtactatact ... atttgaacagGACAATTCCGAGTTCATATCTCGACGCTCGCTGGGGAATTTTGCTAGATCT
EST: GTATCTTAGTTCCAGCTGGACTTCTCAAGGATGCATACGTAGTTGTTAAG GACAATTCCGAGTTCATATCTCGACGCTCGCTGGGGAATTTTGCTAGATCT
genomic: GTATCTTAGTTCCAGCTGGACTTCTCAAGGATGCATACGTAGTTGTTAAGgtactatact ... atttgaacagGACAATTCCGAGTTCATATCTCGACGCTCGCTGGGGAATTTTGCTAGATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGATATGGAAAGAGAACAGTGTGTAAATCTCTTCATGAGAAGGTTTTATGTATCTTAGTTCCAGCTGGACTTCTCAAGGATGCATACGTAGTTGTTAAGgtactatacttatgcaattcagtgttgacatctctgttgttaccttgttcactatgaatgctatttgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG